TABLE 3.

Description of the significant SNPs associated with AFE, EP43w, and EP66w.

EP43w				AFE				EP66w
Chr	Position	P_wald	Qvalue	Chr	Position	P_wald	Qvalue	Chr	Position	P_wald	Qvalue
25	3,219,815	2.91E−08	1.881E−03	25	4,513,397	5.01E−08	3.243E−03	29	4,481,956	2.39E−09	2.535E−03
25	4,442,034	4.05E−08	1.309E−03	25	4,516,366	1.24E−07	4.010E−03	29	4,500,604	4.75E−09	2.517E−03
25	4,442,632	1.68E−07	3.621E−03	25	4,515,630	1.53E−07	3.302E−03	2	129,902,811	1.15E−08	4.075E−03
25	3,216,505	3.52E−07	5.684E−03	25	4,513,382	1.62E−07	2.613E−03	29	4,500,595	1.24E−08	3.280E−03
25	3,227,771	3.80E−07	4.909E−03	25	4,514,932	5.06E−07	6.547E−03	2	129,903,599	2.17E−08	4.600E−03
25	3,216,680	3.91E−07	4.217E−03	25	4,436,853	6.52E−07	7.034E−03	2	129,877,347	2.94E−08	5.184E−03
25	4,443,950	4.56E−07	4.209E−03	25	5,092,232	7.77E−07	7.184E−03	2	129,903,026	3.22E−08	4.869E−03
25	3,238,808	5.49E−07	4.436E−03	25	4,490,115	1.12E−06	9.051E−03	2	129,836,874	3.51E−08	4.645E−03
25	3,220,324	6.57E−07	4.721E−03	25	4,441,061	1.15E−06	8.271E−03	2	129,877,317	3.61E−08	4.255E−03
25	4,444,559	7.30E−07	4.724E−03	25	4,489,078	1.25E−06	8.065E−03	2	129,877,399	3.61E−08	3.829E−03
25	3,233,091	9.80E−07	5.764E−03	25	4,537,557	1.61E−06	9.480E−03	2	129,826,588	4.70E−08	4.530E−03
25	4,513,397	9.92E−07	5.345E−03	25	5,126,926	1.65E−06	8.903E−03	2	129,903,609	6.34E−08	5.598E−03
25	3,229,361	1.25E−06	6.197E−03
25	3,232,968	1.52E−06	7.017E−03
25	3,232,878	1.81E−06	7.798E−03
25	4,513,382	2.26E−06	9.150E−03
25	4,444,987	2.51E−06	9.550E−03

Note. Chr, chromosome number; position, base positions on the chromosome; P_wald, p-value from the wald test; Qvalue, p-value corrected by FDR; SNPs, single-nucleotide polymorphisms; AFE, age at first egg; EP43w, the egg number from onset of laying eggs to 43 weeks; EP66w, the egg number from onset of laying eggs to 66 weeks; FDR, false discovery rate.