Table 2.
Significant associated genomic regions for the agronomic traits: 100 seed weight, days to maturity, plant height, and lodging score detected in combined-year GWAS analysis.
| Trait | Peak SNP ID [Chr_Position(bp)] | Chr | ma | POS | Effecta | SE | Value of p |
|---|---|---|---|---|---|---|---|
| Seed Weight | S17_14,271,552 | 17 | C | 14,271,552 | −1.27 | 0.29 | 2.53E-05 |
| S18_2,625,222 | 18 | G | 2,625,222 | −1.12 | 0.24 | 8.53E-06 | |
| S18_3,536,348 | 18 | C | 3,536,348 | −1.03 | 0.22 | 4.38E-06 | |
| S18_3,820,958 | 18 | C | 3,820,958 | −0.85 | 0.19 | 1.09E-05 | |
| Days to Maturity | S15_46,719,323 | 15 | T | 46,719,323 | 4.87 | 1.12 | 2.48E-05 |
| S18_17,449,562 | 18 | G | 17,449,562 | 6.38 | 1.46 | 2.20E-05 | |
| Plant Height | S05_4,738,203 | 5 | G | 4,738,203 | −4.19 | 0.94 | 1.35E-05 |
| Lodging Score | S09_38,461,706 | 9 | A | 38,461,706 | 0.12 | 0.03 | 2.65E-05 |
| S19_39,376,171 | 19 | G | 39,376,171 | 0.12 | 0.03 | 4.16E-06 |
a
The effect of the minor allele on agronomic trait.
Chr, chromosome number; ma, minor allele; POS, position, and SE, standard error.