AD	Alzheimer’s disease
Aβ	amyloid β-protein
APP	amyloid precursor protein
Atg8	autophagy-related protein 8
AVs	autophagic vacuoles
APLP1	amyloid beta precursor-like protein 1
Atg39	autophagy-related protein 39
ALFY	WD repeat and FYVE domain containing 3
ATGL	adipose triglyceride lipase
ATM	ataxia-telangiectasia mutated
BNIP3	E1B 19 kDa protein-interacting protein 3
BNIP3L	adenovirus E1B 19kDa interacting protein 3-like
Bre5	UBP3-associated protein BRE5
BACE1	beta-site APP-cleaving enzyme 1
CMA	chaperone-mediated autophagy
CHIP	C-terminus of Hsc70-interacting protein
CCPG1	cell cycle progression protein 1
ER	endoplasmic reticulum
ERAD	ER-associated degradation
FIP200	focal adhesion kinase family-interacting protein of 200 kDa
FBXO27	F-box protein
FKBP8	FKBP prolyl isomerase 8
G3BP1	G3BP stress granule assembly factor 1
Galectin 3	LGALS3/GAL3
TRIM16	tripartite motif containing 16
HDAC6	histone deacetylase 6
Hsc70	heat shock cognate protein 70
HSP60	heat shock cognate protein 60
HSP90	heat shock cognate protein 90
HSPs	heat shock proteins
LDs	lipid droplets
LMNB1	lamin B1 protein
LC3	microtubule-associated proteins light chain 3
MFN1/2	mitofusin 1 and 2
Drp1	dynamin-related protein 1
NUFIP1	nuclear fragile X mental retardation-interacting protein 1
NM-DARS	n-methyl-D-aspartate receptors
NFTs	neurofibrillary tangles
Nvj1	nucleus–vacuole junction protein 1
NBR1	neighbor of BRCA1 gene 1
NLRP3	NLR family pyrin domain containing 3
Opa1	optic atrophy 1
PHFs	paired helical filaments
PINK1	PTEN-induced kinase 1
PGC-1-alpha	peroxisome proliferator-activated receptor gamma coactivator 1
PTMs	post-translational modifications
PEX5	peroxisomal biogenesis factor 5
PEX2	peroxisomal biogenesis factor 2
PD	Parkinson’s disease
PPAR/PPARα	peroxisome proliferator activated receptor alpha
PI3P	phosphatidylinositol 3-phosphate
P-tau	phosphorylated tau
ROS	reactive oxygen species
RTN3	reticulon 3
P62	SQSTM1-p62
SEC62	preprotein translocation factor
RB1CC1	RB1-inducible coiled-coil 1
TBK1	serine/threonine protein kinase
TCA	tricarboxylic acid cycle
UPS	ubiquitin–proteasome system
UBA	ubiquitin-associated domains
UCHL1	ubiquitin carboxyl-terminal hydrolase L1
ULK1	Unc-51-like autophagy activating kinase 1
UBP3	ubiquitin carboxyl-terminal hydrolase 3
USP10	ubiquitin-specific protease 10
UPR	unfolding protein response
VDAC1	voltage-dependent anion-selective channel 1
VPS34	vacuolar protein sorting 34
Vac8	vacuole related 8
VCP	valosin-containing protein.