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. 2022 Apr 1;19(7):4223. doi: 10.3390/ijerph19074223

Table 1.

Standard and diagnostic 12S rRNA PCR protocol for R. sanguineus s.l. lineage detection.

Primers Reagent Volume Thermocycler Steps
Cycle Time
Standard 12S rRNA Forward:
AAACTAGGATTAGATACCCTATTATTTTAG
Reverse:
CTATGTAAGCACTTA-
TCTTAATAAAGAGTG
PCR Water 25-sum of other reagents Initial denaturation 95 °C for 30 s
ThermoPol Buffer (New England BioLabs) 2.5 30 cycles:
10 mM dNTPs 0.5 Denaturation 95 °C for 15 s
10 µM FWD Primer 0.5 Annealing 50 °C for 30 s
10 µM REV Primer 0.5 Extension 68 °C for 60 s
Taq (New England BioLabs) 0.125 Final extension 68 °C for 60 s
DNA 3.0 Holding 10°C
Temperate 12S rRNA Forward:
TTTTAGAGGTAAACA-
TTGTT
Reverse:
GCTTAATTCAAATTGA-
CATT
PCR Water 10-sum of other reagents Initial denaturation 95 °C for 30 s
ThermoPol Buffer (New England BioLabs) 1.0 25 cycles:
10 mM dNTPs 0.8 Denaturation 95 °C for 15 s
10 µM FWD Primer 0.5 Annealing 46 °C for 30 s
10 µM REV Primer 0.5 Extension 68 °C for 60 s
Taq (New England BioLabs) 0.1 Final extension 68 °C for 60 s
DNA 1.0 Holding 10 °C
Tropical 12S rRNA Forward:
TTTTAGAGCTTAACAT-
TGTA
Reverse:
GCTTAATTCAAATTAA-
CATC
PCR Water 10-sum of other reagents Initial denaturation 95 °C for 30 s
ThermoPol Buffer (New England BioLabs) 1.0 25 cycles:
10 mM dNTPs 0.8 Denaturation 95 °C for 15 s
10 µM FWD Primer 0.5 Annealing 46 °C for 30 s
10 µM REV Primer 0.5 Extension 68 °C for 60 s
Taq (New England BioLabs) 0.1 Final extension 68 °C for 60 s
DNA 1.0 Holding 10 °C