Table 1.
Primers | Reagent | Volume | Thermocycler Steps | ||
---|---|---|---|---|---|
Cycle | Time | ||||
Standard 12S rRNA | Forward: AAACTAGGATTAGATACCCTATTATTTTAG Reverse: CTATGTAAGCACTTA- TCTTAATAAAGAGTG |
PCR Water | 25-sum of other reagents | Initial denaturation | 95 °C for 30 s |
ThermoPol Buffer (New England BioLabs) | 2.5 | 30 cycles: | |||
10 mM dNTPs | 0.5 | Denaturation | 95 °C for 15 s | ||
10 µM FWD Primer | 0.5 | Annealing | 50 °C for 30 s | ||
10 µM REV Primer | 0.5 | Extension | 68 °C for 60 s | ||
Taq (New England BioLabs) | 0.125 | Final extension | 68 °C for 60 s | ||
DNA | 3.0 | Holding | 10°C | ||
Temperate 12S rRNA | Forward: TTTTAGAGGTAAACA- TTGTT Reverse: GCTTAATTCAAATTGA- CATT |
PCR Water | 10-sum of other reagents | Initial denaturation | 95 °C for 30 s |
ThermoPol Buffer (New England BioLabs) | 1.0 | 25 cycles: | |||
10 mM dNTPs | 0.8 | Denaturation | 95 °C for 15 s | ||
10 µM FWD Primer | 0.5 | Annealing | 46 °C for 30 s | ||
10 µM REV Primer | 0.5 | Extension | 68 °C for 60 s | ||
Taq (New England BioLabs) | 0.1 | Final extension | 68 °C for 60 s | ||
DNA | 1.0 | Holding | 10 °C | ||
Tropical 12S rRNA | Forward: TTTTAGAGCTTAACAT- TGTA Reverse: GCTTAATTCAAATTAA- CATC |
PCR Water | 10-sum of other reagents | Initial denaturation | 95 °C for 30 s |
ThermoPol Buffer (New England BioLabs) | 1.0 | 25 cycles: | |||
10 mM dNTPs | 0.8 | Denaturation | 95 °C for 15 s | ||
10 µM FWD Primer | 0.5 | Annealing | 46 °C for 30 s | ||
10 µM REV Primer | 0.5 | Extension | 68 °C for 60 s | ||
Taq (New England BioLabs) | 0.1 | Final extension | 68 °C for 60 s | ||
DNA | 1.0 | Holding | 10 °C |