Table 2.
Distribution of sequencing data
| Sample | Valid data | Valid ratio(%) | Q30(%) | GC content(%) | Number of reads* | Exon (%) | |||
|---|---|---|---|---|---|---|---|---|---|
| Read | Base (Gb) | Mapped | Unique mapped | Multi-mapped | |||||
| Ctrl1 | 41 047 806 | 6.16 | 80.63 | 97.88 | 48.50 | 39 064 606 (95.17%) | 29 344 754 (71.49%) | 9 719 852 (23.68%) | 85.31 |
| Ctrl2 | 42 838 750 | 6.43 | 78.45 | 98.02 | 48.00 | 41 062 033 (95.85%) | 30 843 666 (72.00%) | 10 218 367 (23.85%) | 85.77 |
| T.g1 | 39 040 728 | 5.86 | 81.19 | 97.94 | 49.00 | 29 830 596 (76.41%) | 22 292 307 (57.10%) | 7 538 289 (19.31%) | 84.88 |
| T.g2 | 37 745 558 | 5.66 | 80.72 | 97.97 | 49.50 | 28 665 634 (75.94%) | 21 512 741 (56.99%) | 7 152 893 (18.95%) | 85.29 |
* Data are expresses as number (percentage). A read: an inferred sequence of base pairs corresponding to all or part of a single DNA fragment. Q30: Phred Quality score of 30 (rate of incorrect base sequencing is less than 0.001); Ctrl: control; T.g: Toxoplasma gondii.