Table 2.
Common DEGs for tolerant line (L220, NIL3, and NIL25) specially expressed cold germination genes.
| Gene | Position | Description | Cluster | Up/Down |
|---|---|---|---|---|
| Zm00001d012591 | Chr8:176955466-176958213 | protein disulfide isomerase | Cluster 3 | Up |
| Zm00001d029091 | Chr1:57485976-57493258 | sucrose synthase 2 | Cluster 1 | Up |
| Zm00001d031209 | Chr1:182293107-182294953 | bx9-benzoxazinone synthesis9 | Cluster 5 | Up |
| Zm00001d031292 | Chr1:185477807-185478616 | harpin-induced protein | Cluster 5 | Up |
| Zm00001d042493 | Chr3:169439385-169441492 | extensin | Cluster 5 | Up |
| Zm00001d037680 | Chr6:133844417-133848578 | Vegetative storage protein 2 | Cluster 3 | Up |
| Zm00001d018029 | Chr5:212390087-212391281 | casparian strip membrane protein 3 | Cluster 3 | Up |
| Zm00001d008587 | Chr8:13681436-13683379 | Class I glutamine amidotransferase-like superfamily protein | Cluster 3 | Up |
| Zm00001d030338 | Chr1:123276181-123277143 | expressed protein | Cluster 5 | Up |
| Zm00001d030080 | Chr1:104119711-104120879 | NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 10-A | Cluster 5 | Up |
| Zm00001d029794 | Chr1:87314979-87316146 | Basic endochitinase B | Cluster 5 | Up |
| Zm00001d044816 | Chr9:3595060-3596502 | casparian strip membrane protein 1 | Cluster 3 | Up |
| Zm00001d028721 | Chr1:44340623-44341737 | lbd4-LBD-transcription factor 4 | Cluster 5 | Up |
| Zm00001d039788 | Chr3:14747663-14748751 | dirigent-like protein | Cluster 3 | Up |
| Zm00001d003418 | Chr2:43780271-43781507 | casparian strip membrane protein 4 | Cluster 3 | Up |
| Zm00001d011720 | Chr8:159835548-159840848 | violaxanthin de-epoxidase3 | Cluster 4 | Up |
| Zm00001d029314 | Chr1:65618909-65621774 | cationic amino acid transporter | Cluster 2 | Down |
| Zm00001d011413 | Chr8:149844919-149847262 | wrky28-WRKY-transcription factor 28 | Cluster 4 | Down |
| Zm00001d005715 | Chr2:184452989-184461356 | vacuolar iron transporter 1.2 | Cluster 2 | Down |
| Zm00001d035725 | Chr6:43572975-43574070 | late embryogenesis abundant protein-related/LEA protein-related | Cluster 2 | Down |
| Zm00001d030086 | Chr1:104416569-104417982 | Tetratricopeptide repeat (TPR)-like superfamily protein | Cluster 1 | Down |
| Zm00001d030988 | Chr1:172180389-172181046 | expressed protein | Cluster 4 | Down |
| Zm00001d013088 | Chr5:4532993-4533650 | Cytochrome P450 | Cluster 4 | Down |
| Zm00001d030627 | Chr1:149688164-149696743 | prefoldin subunit 3 | Cluster 2 | Down |
| Zm00001d030981 | Chr1:171564539-171568092 | probable LRR receptor-like serine/threonine-protein kinase | Cluster 4 | Down |
| Zm00001d030464 | Chr1:134521008-134522680 | carbohydrate transporter/sugar porter | Cluster 1 | Down |
| Zm00001d030232 | Chr1:114928784-114930818 | bhlh111–bHLH-transcription factor 111 | Cluster 2 | Down |