Table 2.
Key resources table
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Mouse monoclonal anti-Human Nuclei | Merck - Millipore | Cat# MAB1281; RRID: AB_94090 |
| Rabbit polyclonal anti Laminin | Merck – Millipore (Sigma Aldrich) | Cat# L9393; RRID: AB_477163 |
| Goat polyclonal anti EphA2 | R&D System | Cat# AF3035; RRID: AB_2277943 |
| Anti-Ki-67 antibody | Millipore | Cat# AB9260; RRID: AB_2142366 |
| Rabbit polyclonal anti Wnt5a | LS Biosciences | Cat# LS-C160634; RRID: AB_2736865 |
| Mouse monoclonal anti BMPR 1b | R&D System | Cat# MAB5051; RRID: AB_2064101 |
| Rabbit polyclonal Glial Fibrillary Acidic Protein (GFAP) | Agilent | Cat# Z0334; RRID: AB_10013382 |
| Mouse Anti-Galactocerebroside C (GalC) | Millipore | Cat# MAB342; RRID: AB_94857 |
| Purified anti-Tubulin beta 3 (TUBB3) | Biolegend | Cat# 801201; RRID: AB_2313773 |
| Goat anti mouse AlexaFluor488 | Thermo Fisher | Cat#; RRID:AB_2534069 |
| Goat anti mouse AlexaFluor546 | Thermo Fisher | Cat# A11003; RRID:AB_141370 |
| Goat anti rabbit AlexaFluor488 | Thermo Fisher | Cat# A11008; RRID:AB_143165 |
| Donkey anti goat AlexaFluor488 | Thermo Fisher | Cat# A11055; RRID:AB_2534102 |
| Goat anti rabbit AlexaFluor546 | Thermo Fisher | Cat# A11010; RRID:AB_2534077 |
| Experimental Models: Organisms/Strains | ||
| Scid-Beige Mouse: CB17.Cg-PrkdcscidLystbg-J/Crl Mus musculus | Charles River | Cat# CRL:250; RRID:IMSR_ CRL:250 |
| Software and Algorithms | ||
| AxioVision Imaging System | Zeiss | RRID:SCR_002677 |
| NIS-Elements | Nikon | RRID:SCR_014329 |
| GraphPad Prism | http://www.graphpad.com/ | RRID:SCR_002798 |
| Integrative genomic viewer (IGV) | http://software.broadinstitute.org/software/igv/ | RRID:SCR_011793 |
| R Project for Statistical Computing | https://www.r-project.org/ | RRID:SCR_001905 |
| PARTEK GENOMICS SUITE | https://www.partek.com/ | RRID:SCR_011860 |
| ARRAYEXPRESS REPOSITORY | https://www.bioconductor.org/packages/release/bioc/html/ArrayExpress.html | RRID:SCR_000120 |
| VARSCAN | http://tvap.genome.wustl.edu/tools/varscan/ | RRID:SCR_006849 |
| ANNOVAR | http://www.openbioinformatics.org/annovar/ | RRID:SCR_012821 |
| GATK | https://software.broadinstitute.org/gatk/ | RRID:SCR_001876 |
| MutationTaster | http://www.mutationtaster.org/ | RRID:SCR_010777 |
| PolyPhen: Polymorphism Phenotyping | http://genetics.bwh.harvard.edu/pph2/ | RRID:SCR_013189 |
| PROVEAN | http://provean.jcvi.org/ | RRID:SCR_002182 |
| SIFT | https://sift.bii.a-star.edu.sg/ | RRID:SCR_012813 |
| Circos | http://circos.ca/ | RRID:SCR_011798 |
| Ingenuity Pathway Analysis | http://www.ingenuity.com/products/pathways_analysis.html/ | RRID:SCR_008653 |
| GISTIC | http://www.mmnt.net/db/0/0/ftp-genome.wi.mit.edu/distribution/GISTIC2.0/ | RRID:SCR_000151 |
| SAMTOOLS | http://www.htslib.org/ | RRID:SCR_002105 |
| CustomCDF | http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp/ | RRID:SCR_018527 |
| Entrez Gene | http://www.ncbi.nlm.nih.gov/gene/ | RRID:SCR_002473 |
| BaseSpace | https://basespace.illumina.com/home/sequence/ | RRID:SCR_011881 |
| CHROMAS | https://technelysium.com.au/wp/chromas/ | RRID:SCR_000598 |
| QIAXCEL | QIAGEN | RRID:SCR_018624 |