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. 2022 Apr 12;13:11. doi: 10.1186/s13100-022-00264-4

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 4 — Violin Plots of TE Density vs Gene Expression in Arabidopsis: Density values are derived from the LTR TE grouping for the 1000 BP window upstream of each gene. Underneath each violin plot is the interval of TE density values that bins the genes being plotted. Underneath each density bin is N, the number of genes for that given bin. The solid dark band inside each violin represents the interquartile range (IQR) of the expression values. The white dot inside the IQR represents the median. The “whiskers” extend 1.5x past the IQR in both directions. Subplot A represents the genes that do not belong to the centromere or pericentromere. Subplot B represents the genes that do belong the pericentromere or centromere