Table 1.

Table of tool performance. Performance was estimated using an Intel Xeon CPU E5-2670 v2 possessing a processor base frequency of 2.50 GHz. Statistics were acquired using the “seff” command on the SLURM workload manager for the computing cluster at Michigan State University. TE Density calculations are performed over chromosomes (pseudomolecules) independently, each chromosome can only utilize one processor at a time. * Chromosomes 7 and 13 were used for the human genome dataset, the genome size is the sum of the lengths of the two chromosomes. The repeat content was not reassessed on a chromosome-by-chromosome basis, and the percentage is referenced from publications [70]. † For the other genomes, repeat annotations and content estimates were derived using the de-novo TE annotator EDTA and may differ from each genome’s respective datasets. Wall time and CPU hours are in day-hh:mm:ss format. Default windows were used (n=20) and the variable, “Max TE Calculations” is defined as the maximum number of unique TE order or superfamily names, whichever is greater

Genome	Chromosome Number	Processors Used	Genome Size (GB)	Repeat Content	Wall Time	CPU Hours	Memory Utilized (GB)	Window X Max TE Calculations
A. thaliana	5	5	∼0.135	14.91% †	00:51:31	02:32:16	32.18	20 X 13
V. corymbosum	48	20	∼1.630	46.50% †	19:34:19	1-23:02:32	603.77	20 X 14
O. sativa	12	12	∼0.500	49.46% †	03:17:23	07:20:49	243.54	20 X 13
O. glaberrima	12	12	∼0.358	39.90% †	02:15:09	04:53:56	154.18	20 X 13
H. sapiens	2*	2	∼0.274*	66% *	5-22:20:15	6-00:07:52	164.80	20 X 35