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Visual representation of the CRISPR spacer alignment pipeline designed in Biopython. Whole-genome sequences are first parsed to identify CRISPR spacers and form a CRISPR array. The largest CRISPR arrays then acted as a seed, and additional arrays were added to the seed in descending order based on size to form a consensus array. A separate consensus was formed for CRR1, CRR2, and CRR4.
