Fig. 2. Comparison between the TE annotation in FlyBase and the TE annotation performed using REPET with the MCTE library.
In blue copies annotated with REPET and in red copies annotated by FlyBase in the reference genome. a Number of TE copies per family. b Overlapping of TE annotations considering that the copies were from the same family and that they were overlapping at least 95% of their lengths (breadth of coverage). TEs shorter than 100 bp, belonging to the INE-1 family and nested TEs were excluded from the analysis. c Distribution of number of TE copies by length in 500 bp bin sizes.