Table 3.
Eighteen candidate adaptive TE insertions showing evidence of selection identified in this work.
| TE ID | Evidence of selection | Freq | Gene symbol | TE Location | Biological process (experimental evidence) |
|---|---|---|---|---|---|
| 2L_14003409_14003462_Rt1a | nSL | 15% | – | Intergenic | – |
| 2L_8992666_8992668_pogo | nSL | 15% | CG9555 | Intron | NA |
| 2R_11394154_11394156_pogo | nSL | 17% | sprt | Intron | NA |
| 2R_12185376_12185380_accord | nSL | 62% | Cyp6g1 | Promoter | response to insecticide |
| 2R_14078395_14078397_hopper | nSL | 11% | Prosap | Intron | synaptic assembly at neuromuscular junction |
| 2R_18807888_18807894_BS | nSL | 62% | CG15096 | 3UTR | transmembrane transport |
| 3L_12863739_12863742_Transpac | nSL | 19% | CG10943 | Promoter | NA |
| 3L_14050243_14050245_pogo | nSL | 28% | CG6833 | Promoter | NA |
| Neurl4 | Promoter | NA | |||
| 3L_2426710_2426713_pogo | nSL | 19% | Svil | Intron | NA |
| 3L_3798612_3798621_1360 | nSL | 30% | CG32264 | Intron | NA |
| 3R_20502048_20502058_Doc | nSL | 28% | Dic2 | Promoter | NA |
| CG46441 | Promoter | NA | |||
| 3R_21385503_21385506_pogo | nSL | 19% | – | Intergenic | – |
| 3R_29952746_29952748_Invader4 | nSL | 23% | TkR99D | Intron | olfactory behavior; detection of chemical stimulus |
| X_15012530_15012533_mdg3 | nSL | 60% | hiw | Intron | autophagy; long-term memory; synapse organization; response to axon injury |
| X_20759991_20759993_BS3 | nSL | 57% | – | Intergenic | – |
| X_2431713_2431716_Doc | nSL | 13% | – | Intergenic | – |
| X_8027468_8027478_Doc6 | nSL | 26% | Tbh | 3UTR | aggressive behavior; behavioral response to ethanol; flight behavior; learning; ovulation |
| 3L_18931204_18931207_F-element | nSL | 15% | CG32204 | Intron | NA |
Biological process information according to FlyBase.