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. 2022 Mar 30;62(7):1691–1711. doi: 10.1021/acs.jcim.2c00044

Table 7. Scaling Across Multiple CPU Instancesa.

instances total vCPUs ranks × threads PME ranks MEM (ns/d) EMEM RIB (ns/d) ERIB
1 96 48 × 2/96 × 1 0/24 127.5 1.00 10.81 1.00
2 192 48 × 4/192 × 1 12/48 158.8 0.62 20.35 0.94
4 384 48 × 8/384 × 1 12/96 201.1 0.39 37.63 0.87
8 768 384 × 2 96 182.9 0.18 59.93 0.69
16 1536 128 × 12/384 × 4 32/96 151.9 0.07 87.21 0.50
32 3072 384 × 8/768 × 4 96/192 144.3 0.04 115.49 0.33
a

GROMACS 2020 performances for MEM and RIB over multiple hpc6a instances. The third column lists the optimal decomposition into MPI ranks and OpenMP threads, and the fourth column lists the optimal number of separate PME ranks; the left entry is for MEM, the right entry for RIB if they differ.