Table 2.

Homologues in H. elongata of the genes found differentially expressed in C. salexigens, Supplementary Tables S6 to S11 in Salvador et al. (2018).

	DE C. salexigens	N homologues	DE both	DE only TPM	DE only DESeq
Compatible solutes	30	24	6	1	3
Oxidative stress	42	29	3	3	0
Iron homeostasis	37	27	4	6	0
Oxidative phosphorylation and electrochemical gradients	55	41	3	4	1
Protein folding stress	19	15	1	2	0
Chemotaxis and motility	45	41	38	0	3

For each group of genes found differentially expressed in C. salexigens, the first column lists how many genes of each group were reported as differentially expressed in C. salexigens, subsequent columns show: how many of those genes had homologues in H. elongata, how many of those were found to be differentially expressed according to both methods applied, which were only so according to DESeq and which only according to the TPM count. While DESeq was only applied to the difference between high and low salt, TPM counts were compared between all three conditions and a log2-fold-change above the threshold between any two, led to inclusion in the list.