Table 3. Lipid Bilayer Structural Properties from Experiment (exp) and Simulations (sim) with Lipid21. Values Are the Average ± st dev over Three Independent 300 ns Simulations.
area per
lipid (Å2) |
volume per lipid (Å3) |
bilayer
thickness DHH (Å) |
|||||
---|---|---|---|---|---|---|---|
lipid type | temp (K) | exp | sim | exp | sim | exp | sim |
DLPC | 303 | 63.2,34 60.835 | 61.14 ± 0.12 | 99134 | 933.23 ± 0.06 | 30.834 | 31.42 ± 0.12 |
DMPC | 303 | 60.6,34 59.935 | 59.71 ± 0.13 | 110136,34 | 1039.32 ± 0.14 | 34.4,37 35.338 | 35.75 ± 0 |
DPPC | 323 | 63.1,35 64.339 | 61.69 ± 0.09 | 123236 | 1163.50 ± 0.21 | 38,40 38.336 | 38.75 ± 0 |
DSPC | 333 | 63.835 | 59.66 ± 0.17 | 1290.99 ± 0.03 | 43.67 ± 0.12 | ||
DOPC | 303 | 67.4,40 72.536 | 66.95 ± 0.20 | 130336 | 1232.84 ± 0.07 | 35.3,41 36.7,40,42 36.9,36 37.143 | 38.00 ± 0.41 |
POPC | 303 | 64.3,35 68.344 | 63.92 ± 0.09 | 125644 | 1190.32 ± 0.13 | 3744 | 38.50 ± 0.20 |
POPE | 310 | 56.6,45 59–6046 | 55.92 ± 0.15 | 118046 | 1129.94 ± 0.26 | 39.546 | 41.50 ± 0.20 |
DLPG | 303 | 65.647 | 65.80 ± 0.07 | 95447 | 927.78 ± 0.06 | 29.33 ± 0.31 | |
DMPG | 303 | 65.147 | 65.25 ± 0.22 | 105747 | 1034.47 ± 0.19 | 32.42 ± 0.24 | |
DPPG | 323 | 67.047 | 67.72 ± 0.13 | 118947 | 1159.95 ± 0.07 | 34.83 ± 0.12 | |
DSPG | 333 | 68.347 | 66.65 ± 0.04 | 130547 | 1293.80 ± 0.14 | 39.00 ± 0.00 | |
DOPG | 303 | 70.847 | 71.08 ± 0.10 | 126547 | 1227.37 ± 0.07 | 35.58 ± 0.31 | |
POPG | 303 | 66.147 | 68.23 ± 0.07 | 120947 | 1185.09 ± 0.04 | 35.92 ± 0.12 | |
DOPS | 303 | 64.148 | 65.47 ± 0.16 | 122848 | 1206.28 ± 0.18 | 39.048 | 39.42 ± 0.24 |
POPS | 298 | 62.749 | 61.78 ± 0.34 | 1154.36 ± 0.31 | 42.249 | 40.17 ± 0.42 | |
POPA | 310 | 63.90 ± 0.04 | 1093.10 ± 0.01 | 37.50 ± 0 | |||
DAPC | 303 | 71.81 ± 0.08 | 1258.34 ± 0.03 | 36.42 ± 0.12 | |||
SDPC | 297 | 68.250 | 65.10 ± 0.28 | 1271.79 ± 0.08 | 37.950 | 40.33 ± 0.24 | |
PSM | 328 | 61.951 | 58.50 ± 0.07 | 1161.751 | 1120.78 ± 0.27 | 37.851 | 39.08 ± 0.12 |
SSM | 328 | 62.551 | 57.10 ± 0.20 | 1226.851 | 1173.44 ± 0.25 | 4051 | 41.42 ± 0.24 |