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. 2022 Mar 9;41(16):2372–2389. doi: 10.1038/s41388-022-02253-6

Fig. 6. UPK1A-AS1 interacted with the DSB repair proteins Ku70 and Ku80.

Fig. 6

A Representative FISH images showing the cellular localization of UPK1A-AS1. The UPK1A-AS1 probe was labeled with Cy3 (red), and the nuclei were stained with DAPI (blue). Scale bar = 10 μm. B qRT-qPCR analysis following subcellular fractionation of UPK1AS-AS1. C Silver staining of UPK1A-AS1-associated nuclear proteins. Two specific bands (arrow) were excised and subjected to mass spectrometry (D) MS identification of UPK1A-AS1-binding proteins. E Western blot analysis of Ku70 and Ku80 using protein samples enriched by biotinylated UPK1A-AS1 sense and antisense RNAs. F Fold enrichment of UPK1A-AS1 in RNA samples precipitated with Ku70, Ku80 or IgG antibody in Panc-1 cells. G Western blot analysis of Ku70 and Ku80 using protein samples enriched by serial deletions of UPK1A-AS1. H RNAalifold predicted the secondary structure of UPK1A-AS1. The insects indicated Ku70 and Ku80 binding stem-loop structures in UPK1A-AS1. I Fold enrichment of UPK1A-AS1 in RNA samples precipitated with Ku70, Ku80 or IgG antibody after site-directed mutagenesis of region A and region B of UPK1A-AS1 in Panc-1 cells. The results are presented as the mean ± SD of three technical replicates. **P < 0.01; ***P < 0.001.