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. 2022 Apr 14;13:1998. doi: 10.1038/s41467-022-29744-0

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — (IDs: kidney SNARE ATAC/RNA 20201005) (a) UMAP plot of the chromatin modality for the kidney SNARE-seq dataset with 31,758 cells. First, we obtain a cell-by-cistopic matrix by running cisTopic which is then used to define clusters via Leiden clustering. b Corresponding UMAP plot of the expression matrix with cluster assignments copied from a. Cellar’s dual mode allows a cell ID based label transfer from one modality to the other.