Table 2.
Overview of the Stage 2: Binding pose prediction submissions. 5 sets of predictions were submitted for Stage 2. The first, second, third and fourth columns correspond to the submission identification number (SID), the affiliation of the participants, the method’s name and the list of software used
| SID | Participant Affiliation | Method Name | Method category | Software used |
|---|---|---|---|---|
| 77 |
Molecular Modeling Section Lab (Prof. Stefano Moro) University of Padova, Italy |
HT-SuMD | Other, (MD) |
MOE 2019.01 Acemd3 VMD Python 3.6 scikit-learn 0.21.3 AmberTools 2016 |
| 75 | Acellera | rDock-rDeep | Docking, ML |
rdkit 2018.03.4 HTMD Playmolecule proteinPrepare rDock rDeep v0 |
| 64 | Not provided | 2d feature model | Docking | Smina |
| 79 |
The University of Tokyo, Japan SHaLX Inc. |
Template docking | Docking | Molegro Virtual Docker (7.0.0) |
| 80 | Institut de Chimie des Substances Naturelles, CNRS, Gif-sur-Yvette, France | ranking_stage2 | Docking |
Schrodinger LigPrep v48012 CACTVS Chemoinformatics Toolkit V3.4.6.26 CORINA v4.2.0 CCDC GOLD v5.7.1 (CSDS-2019-1) |