Table 1.
Reference genome metrics
| C. briggsae QX1410 | C. briggsae VX34 | C. briggsae AF16 | C. elegans N2 | |
|---|---|---|---|---|
| Accession | PRJNA784955 | PRJNA784955 | PRJNA10731 | PRJNA13758 |
| Version | v1 | v1 | WS279 | WS279 |
| Span (Mb) | 106.2 | 107.0 | 108.4 | 100.2 |
| Number of scaffolds | 6 (+MT) | 6 (+MT) | 367 | 6 (+MT) |
| Number of unassigned scaffolds | 0 | 0 | 361 | 0 |
| Percentage of assembly span in in six scaffolds (%) | 100 | 100 | 97.0 | 100 |
| Scaffold N50 (Mb) | 17.1 | 17.3 | 17.5 | 17.5 |
| Number of contigsa | 14 | 10 | 5,074 | 6 |
| Contig N50 (Mb)a | 14.7 | 16.1 | 0.05 | 17.5 |
| Number of gaps | 7 | 3 | 4,707 | 0 |
| Span of Ns (kb) | 3.5 | 1.5 | 2,965.5 | 0 |
| BUSCOb completeness (%) | 99.4 | 99.4 | 98.8 | 99.4 |
| QV scorec | 45.6 | 44.4 | – | – |
a
Contig values calculated by splitting scaffolds at ≥10 consecutive Ns.
b
Genome completeness was assessed using BUSCO (version 4.1.4) with the nematoda_odb10 dataset.
c
QV scores were calculated by Merqury (version 1.1) using short-read Illumina data. QV scores of 45.6 and 44.4 correspond to one error every 36.2 and 27.5 kb, respectively.