Table 3.
Statistics of DADA2 process.
| Sample-id | Input | Filtered | Percentage of input passed filter | Denoised | Non-chimeric | Percentage of input non-chimeric |
|---|---|---|---|---|---|---|
| AX105 | 29,983 | 29,357 | 97.91 | 29,072 | 28,774 | 95.97 |
| AX108 | 27,296 | 26,563 | 97.31 | 26,401 | 25,066 | 91.83 |
| AX183 | 25,841 | 25,151 | 97.33 | 24,415 | 21,908 | 84.78 |
| AX185 | 24,474 | 23,578 | 96.34 | 22,877 | 22,836 | 93.31 |
| AX186 | 25,803 | 25,146 | 97.45 | 25,059 | 25,042 | 97.05 |
| AX187 | 23,654 | 22,945 | 97 | 22,493 | 22,151 | 93.65 |
| AX188 | 23,135 | 22,235 | 96.11 | 22,213 | 22,148 | 95.73 |
| AX189 | 26,040 | 25,165 | 96.64 | 24,782 | 24,212 | 92.98 |
| AX190 | 26,514 | 25,705 | 96.95 | 25,396 | 24,572 | 92.68 |
| AX191 | 24,381 | 23,595 | 96.78 | 23,389 | 23,040 | 94.5 |
| AX192 | 23,889 | 23,256 | 97.35 | 23,175 | 23,151 | 96.91 |
| AX193 | 22,621 | 21,795 | 96.35 | 21,485 | 21,272 | 94.04 |
| AX194 | 24,836 | 24,271 | 97.73 | 23,924 | 19,870 | 80 |
| AX195 | 25,187 | 24,477 | 97.18 | 24,140 | 20,219 | 80.28 |
| AX196 | 21,774 | 21,023 | 96.55 | 20,775 | 20,561 | 94.43 |
| AX197 | 27,039 | 26,324 | 97.36 | 26,123 | 23,449 | 86.72 |
| AX198 | 22,583 | 21,835 | 96.69 | 21,783 | 21,783 | 96.46 |
| AX199 | 25,533 | 24,722 | 96.82 | 24,568 | 22,305 | 87.36 |
| AX200 | 26,361 | 25,525 | 96.83 | 25,264 | 24,629 | 93.43 |
| AX201 | 23,644 | 22,830 | 96.56 | 22,422 | 21,455 | 90.74 |
| AX202 | 28,142 | 27,378 | 97.29 | 27,226 | 27,133 | 96.41 |
| AX203 | 26,313 | 25,462 | 96.77 | 25,400 | 25,357 | 96.37 |
| AX204 | 22,017 | 21,453 | 97.44 | 21,092 | 20,404 | 92.67 |
| AX205 | 25,658 | 25,033 | 97.56 | 24,682 | 23,865 | 93.01 |
| AX218 | 28,538 | 27,908 | 97.79 | 27,492 | 27,038 | 94.74 |
| AX219 | 29,233 | 28,585 | 97.78 | 28,042 | 25,481 | 87.17 |
| AX220 | 31,621 | 31,002 | 98.04 | 30,729 | 30,542 | 96.59 |
| AX221 | 27,740 | 27,171 | 97.95 | 26,820 | 26,578 | 95.81 |
| AX222 | 28,922 | 28,285 | 97.8 | 27,932 | 27,060 | 93.56 |
| AX223 | 29,356 | 28,742 | 97.91 | 28,275 | 27,776 | 94.62 |
| AX237 | 29,285 | 28,436 | 97.1 | 27,828 | 27,006 | 92.22 |
| AX89 | 29,078 | 28,364 | 97.54 | 28,178 | 27,452 | 94.41 |
| AX90 | 30,345 | 29,594 | 97.53 | 29,109 | 28,728 | 94.67 |
| AX91 | 28,737 | 27,995 | 97.42 | 27,543 | 26,349 | 91.69 |
| AX92 | 31,272 | 30,550 | 97.69 | 30,204 | 29,688 | 94.93 |
| AX93 | 31,914 | 31,121 | 97.52 | 30,663 | 30,418 | 95.31 |
| AX94 | 26,137 | 25,498 | 97.56 | 24,537 | 23,888 | 91.4 |
| AX95 | 30,791 | 30,026 | 97.52 | 29,634 | 29,226 | 94.92 |
| AX96 | 29,774 | 29,067 | 97.63 | 28,984 | 28,777 | 96.65 |
| CCL.C | 39,548 | 32,953 | 83.32 | 28,879 | 26,034 | 65.83 |
| CCL.K | 40,007 | 31,407 | 78.5 | 28,456 | 26,491 | 66.22 |
| CN.C | 74,827 | 66,512 | 88.89 | 59,483 | 51,271 | 68.52 |
| CN.K | 60,205 | 51,137 | 84.94 | 47,316 | 40,943 | 68.01 |
| FLS.C | 70,579 | 62,242 | 88.19 | 55,838 | 51,483 | 72.94 |
| FLS.K | 35,754 | 27,417 | 76.68 | 23,745 | 21,038 | 58.84 |
| GQJ.C | 35,747 | 28,535 | 79.82 | 24,497 | 22,441 | 62.78 |
| GQJ.K | 48,471 | 38,075 | 78.55 | 35,665 | 33,495 | 69.1 |
| GTAA917 | 94,017 | 91,203 | 97.01 | 84,242 | 68,863 | 73.25 |
| GTAB917 | 76,086 | 73,749 | 96.93 | 67,693 | 48,301 | 63.48 |
| GTAC920 | 91,839 | 88,836 | 96.73 | 81,492 | 52,122 | 56.75 |
| GTAD922 | 121,808 | 118,231 | 97.06 | 112,856 | 93,935 | 77.12 |
| GTAE1009 | 98,278 | 95,132 | 96.8 | 86,948 | 67,386 | 68.57 |
| GTAF923 | 65,734 | 63,684 | 96.88 | 57,577 | 45,317 | 68.94 |
| GTAG1009 | 84,974 | 82,398 | 96.97 | 75,266 | 60,098 | 70.73 |
| GTN1211 | 69,202 | 65,344 | 94.43 | 58,770 | 50,567 | 73.07 |
| GTR124 | 58,951 | 56,458 | 95.77 | 50,093 | 42,219 | 71.62 |
| GTS1210 | 72,719 | 69,587 | 95.69 | 64,192 | 57,459 | 79.02 |
| GTW927 | 80,856 | 78,438 | 97.01 | 69,565 | 45,248 | 55.96 |
| GTX908 | 94,363 | 91,296 | 96.75 | 84,195 | 65,260 | 69.16 |
| GZC.C | 60,985 | 51,653 | 84.7 | 46,107 | 37,539 | 61.55 |
| GZC.K | 58,292 | 47,595 | 81.65 | 42,192 | 38,458 | 65.97 |
| HGT | 22,684 | 22,060 | 97.25 | 20,060 | 17,209 | 75.86 |
| HZY | 28,082 | 27,315 | 97.27 | 26,521 | 25,056 | 89.22 |
| JXY.C | 74,113 | 67,473 | 91.04 | 62,849 | 53,135 | 71.69 |
| JXY.K | 61,784 | 53,642 | 86.82 | 50,508 | 44,709 | 72.36 |
| KR | 26,567 | 25,835 | 97.24 | 25,038 | 24,679 | 92.89 |
| LCH.C | 37,971 | 31,415 | 82.73 | 26,000 | 23,848 | 62.81 |
| LCH.K | 40,090 | 30,930 | 77.15 | 28,231 | 26,749 | 66.72 |
| LSH | 30,211 | 29,441 | 97.45 | 28,898 | 28,236 | 93.46 |
| LSQ.C | 37,176 | 30,653 | 82.45 | 26,181 | 23,269 | 62.59 |
| LSQ.K | 58,289 | 47,923 | 82.22 | 44,611 | 36,848 | 63.22 |
| LXH.C | 66,978 | 60,755 | 90.71 | 56,120 | 44,859 | 66.98 |
| LXH.K | 52,420 | 43,021 | 82.07 | 41,399 | 40,487 | 77.24 |
| LZX.C | 75,601 | 70,615 | 93.4 | 65,276 | 53,412 | 70.65 |
| LZX.K | 42,777 | 33,608 | 78.57 | 30,532 | 28,851 | 67.45 |
| NAYF0001 | 65,708 | 55,236 | 84.06 | 54,084 | 53,558 | 81.51 |
| NAYF0002 | 69,966 | 61,473 | 87.86 | 59,255 | 57,856 | 82.69 |
| NAYF0003 | 71,314 | 62,848 | 88.13 | 61,386 | 60,159 | 84.36 |
| NAYF0004 | 64,769 | 56,754 | 87.63 | 54,827 | 52,443 | 80.97 |
| NAYF0005 | 59,420 | 51,893 | 87.33 | 50,411 | 49,623 | 83.51 |
| NAYF0006 | 70,403 | 61,747 | 87.71 | 57,016 | 50,270 | 71.4 |
| NAYF0007 | 71,823 | 62,746 | 87.36 | 59,658 | 48,224 | 67.14 |
| NAYF0008 | 69,922 | 61,305 | 87.68 | 59,113 | 56,684 | 81.07 |
| NAYF0009 | 72,925 | 64,153 | 87.97 | 62,778 | 61,702 | 84.61 |
| NAYF0010 | 63,548 | 55,523 | 87.37 | 54,158 | 50,168 | 78.95 |
| NAYF0011 | 57,529 | 49,318 | 85.73 | 47,854 | 43,532 | 75.67 |
| NAYF0012 | 72,206 | 63,935 | 88.55 | 59,807 | 53,781 | 74.48 |
| NAYF0013 | 68,853 | 60,686 | 88.14 | 59,405 | 58,490 | 84.95 |
| NAYF0014 | 64,526 | 57,369 | 88.91 | 55,850 | 54,401 | 84.31 |
| NAYF0015 | 67,537 | 59,388 | 87.93 | 58,056 | 54,023 | 79.99 |
| NAYF0016 | 66,588 | 59,071 | 88.71 | 57,325 | 55,535 | 83.4 |
| NAYF0017 | 68,074 | 60,146 | 88.35 | 58,209 | 57,126 | 83.92 |
| NAYF0018 | 61,711 | 54,166 | 87.77 | 52,977 | 52,479 | 85.04 |
| NAYF0019 | 62,616 | 55,523 | 88.67 | 54,498 | 54,063 | 86.34 |
| NAYF0020 | 73,741 | 65,952 | 89.44 | 64,419 | 63,421 | 86.01 |
| NAYF0021 | 62,954 | 56,668 | 90.01 | 54,649 | 53,536 | 85.04 |
| NAYF0022 | 71,903 | 64,551 | 89.78 | 62,471 | 61,743 | 85.87 |
| NAYF0023 | 74,305 | 66,411 | 89.38 | 65,094 | 60,162 | 80.97 |
| NAYF0024 | 62,278 | 55,212 | 88.65 | 53,616 | 52,771 | 84.73 |
| NAYF0025 | 71,301 | 64,255 | 90.12 | 62,946 | 61,135 | 85.74 |
| NAYF0026 | 73,386 | 65,723 | 89.56 | 63,755 | 62,764 | 85.53 |
| NAYF0027 | 75,736 | 67,955 | 89.73 | 65,787 | 64,069 | 84.6 |
| NAYF0028 | 64,630 | 57,217 | 88.53 | 55,879 | 55,095 | 85.25 |
| NAYK0001 | 56,072 | 52,683 | 93.96 | 49,144 | 46,930 | 83.7 |
| NAYK0005 | 53,262 | 49,853 | 93.6 | 46,851 | 44,043 | 82.69 |
| NAYK0006 | 53,844 | 50,630 | 94.03 | 47,515 | 43,439 | 80.68 |
| NAYK0007 | 70,301 | 65,649 | 93.38 | 62,123 | 57,644 | 82 |
| NAYK0009 | 69,989 | 65,448 | 93.51 | 62,065 | 59,026 | 84.34 |
| NAYK0010 | 55,159 | 51,824 | 93.95 | 48,539 | 44,297 | 80.31 |
| NAYK0011 | 68,798 | 63,898 | 92.88 | 59,264 | 54,040 | 78.55 |
| NAYK0012 | 75,927 | 68,909 | 90.76 | 64,882 | 58,449 | 76.98 |
| NAYK0013 | 70,485 | 65,138 | 92.41 | 60,680 | 51,357 | 72.86 |
| NAYK0014 | 62,012 | 57,488 | 92.7 | 52,970 | 48,067 | 77.51 |
| NAYK0015 | 68,025 | 62,928 | 92.51 | 59,007 | 51,998 | 76.44 |
| NAYK0016 | 74,992 | 69,847 | 93.14 | 64,449 | 54,073 | 72.11 |
| NAYK0017 | 75,771 | 70,542 | 93.1 | 66,327 | 58,269 | 76.9 |
| NAYK0019 | 69,989 | 64,916 | 92.75 | 60,863 | 56,005 | 80.02 |
| NAYK0020 | 77,982 | 71,844 | 92.13 | 67,242 | 58,205 | 74.64 |
| NAYK0022 | 85,618 | 79,566 | 92.93 | 75,469 | 62,046 | 72.47 |
| NAYK0023 | 76,164 | 70,758 | 92.9 | 66,787 | 49,602 | 65.13 |
| NXG.C | 43,572 | 35,513 | 81.5 | 31,858 | 29,764 | 68.31 |
| NXG.K | 44,610 | 36,539 | 81.91 | 32,963 | 31,181 | 69.9 |
| SXF.C | 42,399 | 34,945 | 82.42 | 30,344 | 27,109 | 63.94 |
| SXF.K | 45,877 | 36,971 | 80.59 | 33,390 | 32,186 | 70.16 |
| WCQ | 30,858 | 30,019 | 97.28 | 29,353 | 28,623 | 92.76 |
| WHT | 31,431 | 30,515 | 97.09 | 29,903 | 27,109 | 86.25 |
| XA | 29,954 | 29,125 | 97.23 | 28,148 | 27,858 | 93 |
| XDC.C | 75,033 | 71,326 | 95.06 | 64,782 | 53,875 | 71.8 |
| XDC.K | 61,580 | 51,943 | 84.35 | 49,571 | 47,137 | 76.55 |
| XHY | 24,804 | 24,128 | 97.27 | 22,369 | 20,707 | 83.48 |
| XSY.C | 60,943 | 52,388 | 85.96 | 47,656 | 40,231 | 66.01 |
| XSY.K | 42,293 | 33,967 | 80.31 | 29,300 | 28,405 | 67.16 |
| YCY.C | 36,506 | 29,285 | 80.22 | 25,885 | 21,377 | 58.56 |
| YCY.K | 35,486 | 27,698 | 78.05 | 23,428 | 23,139 | 65.21 |
| YHY | 25,858 | 25,127 | 97.17 | 24,640 | 23,985 | 92.76 |
| YY.C | 40,246 | 32,709 | 81.27 | 28,260 | 23,635 | 58.73 |
| YY.K | 41,994 | 34,119 | 81.25 | 29,882 | 28,127 | 66.98 |
| YZH.C | 36,442 | 29,278 | 80.34 | 25,438 | 20,613 | 56.56 |
| YZH.K | 43,675 | 35,483 | 81.24 | 30,698 | 28,868 | 66.1 |
| YZL.C | 41,205 | 33,519 | 81.35 | 29,063 | 25,729 | 62.44 |
| YZL.K | 68,400 | 60,040 | 87.78 | 55,110 | 48,276 | 70.58 |
| ZPX.C | 39,239 | 33,563 | 85.53 | 30,153 | 23,422 | 59.69 |
| ZPX.K | 55,131 | 46,142 | 83.7 | 42,825 | 37,347 | 67.74 |
| ZXM.C | 76,603 | 74,145 | 96.79 | 68,243 | 56,953 | 74.35 |
| ZXM.K | 34,510 | 26,737 | 77.48 | 23,019 | 22,332 | 64.71 |
| ZY209992 | 70,719 | 65,173 | 92.16 | 58,129 | 50,136 | 70.89 |
| ZY209993 | 56,124 | 51,565 | 91.88 | 45,891 | 36,517 | 65.06 |
| ZY209994 | 56,119 | 51,527 | 91.82 | 47,296 | 36,868 | 65.7 |
| ZY209995 | 65,293 | 60,231 | 92.25 | 54,731 | 42,541 | 65.15 |
| ZY209996 | 57,975 | 53,644 | 92.53 | 49,097 | 32,100 | 55.37 |
| ZY209997 | 62,687 | 58,090 | 92.67 | 54,758 | 38,886 | 62.03 |
| ZY209998 | 85,212 | 79,264 | 93.02 | 75,841 | 74,643 | 87.6 |
| ZY209999 | 55,297 | 51,140 | 92.48 | 46,749 | 37,553 | 67.91 |
| ZYJK-1 | 29,587 | 28,962 | 97.89 | 28,652 | 28,197 | 95.3 |
| ZYJK-2 | 28,961 | 28,380 | 97.99 | 27,900 | 27,225 | 94.01 |
| ZYJK-3 | 28,985 | 28,374 | 97.89 | 27,458 | 26,891 | 92.78 |
| ZYJK-5 | 26,788 | 26,312 | 98.22 | 26,241 | 25,677 | 95.85 |
| ZYJK-6 | 31,074 | 30,572 | 98.38 | 29,848 | 28,779 | 92.61 |