Figure 6.

RMS descriptors of the enhanced sampling trajectories. (a) RMSD values calculated by first fitting the C_α of the PAS-GAF region to a reference structure. (b) RMSF values calculated for each residue of Pr and Pfr. Dots indicate RMSF values for most fluctuating residue regions. The first curve is the Pr trajectory with a reference structure of the Pr X-ray while the second trajectory (Pfr) is the Pfr trajectory with a reference given by the Pfr X-ray state. For the structures of Pr and Pfr colored by the RMSF values, see Figure S12.