TABLE 5.
Genes related to selenium metabolism in R. aceris ZF458 and other Rahnella strains.
| Strain |
Rahnella aceris ZF458 |
R. aquatilis ZF7 |
R. aquatilis HX2 |
Rahnella sp. Y9602 |
R. aquatilis ATCC 33071 |
||||||
| Genes | Product definition | Locus Tag | Protein ID | Protein ID | Homology (%) | Protein ID | Homology (%) | Protein ID | Homology (%) | Protein ID | Homology (%) |
| Selenium transportation | |||||||||||
| cysA | sulfate/thiosulfate ABC transporter ATP-binding protein CysA | JHW33_RS22210 | WP_013574427.1 | WP_013574427.1 | 100 | WP_013574427.1 | 100 | WP_013574427.1 | 100 | WP_015696312.1 | 98 |
| cysW | sulfate/thiosulfate ABC transporter permease CysW | JHW33_RS22205 | WP_013574426.1 | WP_013574426.1 | 100 | WP_013574426.1 | 100 | WP_013574426.1 | 100 | WP_015696311.1 | 97 |
| cysT | sulfate/thiosulfate ABC transporter permease CysT | JHW33_RS22200 | WP_013574425.1 | WP_013574425.1 | 100 | WP_013574425.1 | 100 | WP_013574425.1 | 100 | WP_013574425.1 | 100 |
| cysP | thiosulfate-binding protein | JHW33_RS22195 | WP_200224495.1 | WP_112151264.1 | 99 | WP_013574424.1 | 99 | WP_013574424.1 | 99 | WP_015696310.1 | 97 |
| cysJ | NADPH-dependent assimilatory sulfite reductase flavoprotein subunit | JHW33_RS19955 | WP_037034152.1 | WP_119261245.1 | 99 | WP_013574003.1 | 99 | WP_013574003.1 | 99 | WP_015695893.1 | 98 |
| cysI | assimilatory sulfite reductase (NADPH) hemoprotein subunit | JHW33_RS19960 | WP_200227283.1 | WP_119262218.1 | 99 | WP_013574004.1 | 99 | WP_013574004.1 | 99 | WP_015695894.1 | 98 |
| tsgA | MFS transporter TsgA | JHW33_RS01475 | WP_200224981.1 | WP_013574731.1 | 99 | WP_015689560.1 | 99 | WP_013574731.1 | 99 | WP_015696567.1 | 97 |
| hfq | RNA chaperone Hfq | JHW33_RS18790 | WP_013573763.1 | WP_013573763.1 | 100 | WP_013573763.1 | 100 | WP_013573763.1 | 100 | WP_013573763.1 | 100 |
| Selenate reduction | |||||||||||
| narG | nitrate reductase subunit alpha | JHW33_RS04765 | WP_200225200.1 | WP_112152550.1 | 99 | WP_013575749.1 | 99 | WP_013575749.1 | 99 | WP_015697516.1 | 99 |
| narH | nitrate reductase subunit beta | JHW33_RS04770 | WP_200225201.1 | WP_037034411.1 | 99 | WP_013575748.1 | 99 | WP_013575748.1 | 99 | WP_015697515.1 | 99 |
| narJ | nitrate reductase molybdenum cofactor assembly chaperone | JHW33_RS04775 | WP_013575747.1 | WP_013575747.1 | 100 | WP_013575747.1 | 100 | WP_013575747.1 | 100 | WP_015697514.1 | 94 |
| narI | respiratory nitrate reductase subunit gamma | JHW33_RS04780 | WP_013575746.1 | WP_013575746.1 | 100 | WP_013575746.1 | 100 | WP_013575746.1 | 100 | WP_015697514.1 | 99 |
| narX | nitrate/nitrite two-component system sensor histidine kinase NarX | JHW33_RS06285 | WP_131637636.1 | WP_013575417.1 | 99 | WP_015689909.1 | 99 | WP_013575417.1 | 99 | WP_015697474.1 | 96 |
| narL | two-component system response regulator NarL | JHW33_RS06290 | WP_013575416.1 | WP_013575416.1 | 100 | WP_013575416.1 | 100 | WP_013575416.1 | 100 | WP_015697475.1 | 99 |
| fdnG | formate dehydrogenase-N subunit alpha | JHW33_RS16845 | WP_200223551.1 | WP_119261065.1 | 99 | WP_013573395.1 | 99 | WP_013573395.1 | 99 | WP_014333323.1 | 99 |
| dmsB | dimethylsulfoxide reductase subunit B | JHW33_RS01730 | WP_013574782.1 | WP_013574782.1 | 100 | WP_013574782.1 | 100 | WP_013574782.1 | 100 | WP_015696614.1 | 99 |
| dmsA | dimethylsulfoxide reductase subunit A | JHW33_RS01725 | WP_037036060.1 | WP_112198016.1 | 99 | WP_013574781.1 | 99 | WP_013574781.1 | 99 | WP_015696613.1 | 98 |
| dmsD | Tat proofreading chaperone DmsD | JHW33_RS01740 | WP_037036059.1 | WP_112151145.1 | 99 | WP_013574784.1 | 99 | WP_013574784.1 | 99 | WP_015696616.1 | 95 |
| dmsC | dimethyl sulfoxide reductase anchor subunit family protein | JHW33_RS01735 | WP_013574783.1 | WP_013574783.1 | 100 | WP_013574783.1 | 100 | WP_013574783.1 | 100 | WP_015696615.1 | 94 |
| ynfE | dimethyl sulfoxide reductase subunit A | NA | NA | WP_119261427.1 | NA | WP_013574780.1 | NA | WP_013574780.1 | NA | WP_015696612.1 | NA |
| arrA | molybdopterin-dependent oxidoreductase | JHW33_RS25040 | WP_013578099.1 | WP_119262333.1 | 100 | WP_013578099.1 | 100 | WP_013578099.1 | 100 | WP_014341807.1 | 94 |
| tatE | twin-arginine translocase subunit TatE | JHW33_RS10290 | WP_013576504.1 | WP_013576504.1 | 100 | WP_013576504.1 | 100 | WP_013576504.1 | 100 | WP_013576504.1 | 100 |
| tatE | twin-arginine translocase subunit TatE | JHW33_RS15180 | WP_013577433.1 | WP_013577433.1 | 100 | WP_013577433.1 | 100 | WP_013577433.1 | 100 | WP_013577433.1 | 100 |
| tatB | Sec-independent protein translocase subunit TatB | JHW33_RS15175 | WP_013577432.1 | WP_013577432.1 | 100 | WP_013577432.1 | 100 | WP_013577432.1 | 100 | WP_015699057.1 | 90 |
| tatC | Sec-independent protein translocase subunit TatC | JHW33_RS15170 | WP_013577431.1 | WP_013577431.1 | 100 | WP_013577431.1 | 100 | WP_013577431.1 | 100 | WP_013577431.1 | 100 |
| tatD | 3′-5′ ssDNA/RNA exonuclease TatD | JHW33_RS15165 | WP_037035383.1 | WP_119262167.1 | 100 | WP_015690569.1 | 100 | WP_013577430.1 | 100 | WP_015699056.1 | 100 |
| fnr | FNR family transcription factor | JHW33_RS05565 | WP_013575564.1 | WP_013575564.1 | 100 | WP_013575564.1 | 100 | WP_013575564.1 | 100 | WP_013575564.1 | 100 |
| Selenite reduction | |||||||||||
| nirB | nitrite reductase large subunit NirB | JHW33_RS04975 | WP_200225216.1 | WP_119262240.1 | 99 | WP_013575696.1 | 99 | WP_013575695.1 | 99 | WP_015697260.1 | 96 |
| nirD | nitrite reductase large subunit NirD | JHW33_RS17985 | WP_200223720.1 | WP_119261122.1 | 97 | WP_013573623.1 | 97 | WP_013573623.1 | 97 | WP_037040691.1 | 96 |
| frdA | flavocytochrome c | JHW33_RS05300 | WP_134705689.1 | WP_013575619.1 | 99 | WP_013575619.1 | 99 | WP_013575619.1 | 99 | WP_015697429.1 | 99 |
| frdD | fumarate reductase subunit FrdD | JHW33_RS18690 | WP_014333645.1 | WP_013573746.1 | 100 | WP_013573746.1 | 100 | WP_013573746.1 | 99 | WP_014333645.1 | 99 |
| frdC | fumarate reductase subunit FrdC | JHW33_RS18695 | WP_200223783.1 | WP_119261151.1 | 99 | WP_013573747.1 | 99 | WP_013573747.1 | 99 | WP_014333646.1 | 97 |
| frdA | fumarate reductase (quinol) flavoprotein subunit | JHW33_RS18705 | WP_014411553.1 | WP_119261153.1 | 100 | WP_014411553.1 | 99 | WP_013573749.1 | 99 | WP_014333648.1 | 99 |
| iscR | Fe-S cluster assembly transcriptional regulator IscR | JHW33_RS21885 | WP_013574363.1 | WP_013574363.1 | 100 | WP_013574363.1 | 100 | WP_013574363.1 | 100 | WP_015696248.1 | 99 |
| gorA | glutathione-disulfide reductase | JHW33_RS17480 | WP_037033742.1 | WP_119261551.1 | 99 | WP_013573520.1 | 99 | WP_013573520.1 | 99 | WP_014333456.1 | 99 |
| trxA | thioredoxin TrxA | JHW33_RS15705 | WP_013577537.1 | WP_013577537.1 | 100 | WP_013577537.1 | 100 | WP_013577537.1 | 100 | WP_013577537.1 | 100 |
| trxB | thioredoxin-disulfide reductase | JHW33_RS01690 | WP_015689578.1 | WP_015689578.1 | 100 | WP_015689578.1 | 100 | WP_013574774.1 | 99 | WP_015696607.1 | 99 |
| trxC | thioredoxin TrxC | JHW33_RS20360 | WP_013574074.1 | WP_013574074.1 | 100 | WP_013574074.1 | 100 | WP_013574074.1 | 100 | WP_015695963.1 | 99 |
| grxA | GrxA family glutaredoxin | JHW33_RS04425 | WP_013575818.1 | WP_013575818.1 | 100 | WP_013575818.1 | 100 | WP_013575818.1 | 100 | WP_013575818.1 | 100 |
| grxB | glutaredoxin 2 | JHW33_RS02700 | WP_013575015.1 | WP_013575015.1 | 100 | WP_013575015.1 | 100 | WP_013575015.1 | 100 | WP_015696848.1 | 95 |
| grxC | glutaredoxin 3 | JHW33_RS16070 | WP_013577603.1 | WP_013577603.1 | 100 | WP_013577603.1 | 100 | WP_013577603.1 | 100 | WP_015699202.1 | 99 |
| sodA | superoxide dismutase, Mn | JHW33_RS16835 | WP_013573393.1 | WP_013573393.1 | 100 | WP_013573393.1 | 100 | WP_013573393.1 | 100 | WP_014333320.1 | 98 |
| Selenium association | |||||||||||
| selA | DgaE family pyridoxal phosphate-dependent ammonia lyase | JHW33_RS14260 | WP_200223032.1 | WP_013577265.1 | 99 | WP_013577265.1 | 99 | WP_013577265.1 | 99 | WP_015698901.1 | 97 |
| cysK | cysteine synthase A | JHW33_RS22245 | WP_013574434.1 | WP_013574434.1 | 100 | WP_013574434.1 | 100 | WP_013574434.1 | 100 | WP_015696317.1 | 99 |
| metB | cystathionine gamma-synthase | JHW33_RS15930 | WP_013577576.1 | WP_013577576.1 | 100 | WP_013577576.1 | 100 | WP_013577576.1 | 100 | WP_015699179.1 | 99 |
| metC | cystathionine beta-lyase | JHW33_RS19835 | WP_200224006.1 | WP_119261241.1 | 99 | WP_013573978.1 | 99 | WP_013573978.1 | 99 | WP_015695874.1 | 96 |
| metE | 5-methyltetrahydropteroyl- triglutamate-homocysteine S-methyltransferase | JHW33_RS15280 | WP_200223241.1 | WP_119262170.1 | 99 | WP_013577450.1 | 99 | WP_013577450.1 | 99 | WP_015699072.1 | 97 |
| metH | methionine synthase | JHW33_RS14885 | WP_200223128.1 | WP_013577387.1 | 99 | WP_013577387.1 | 99 | WP_013577387.1 | 99 | WP_015699018.1 | 99 |
| sufS | cysteine desulfurase SufS | JHW33_RS07945 | WP_200226532.1 | WP_112197126.1 | 99 | WP_013576097.1 | 99 | WP_013576097.1 | 99 | WP_015697804.1 | 97 |
| sufE | cysteine desulfuration protein SufE | JHW33_RS07940 | WP_134705911.1 | WP_112152177.1 | 98 | WP_013576096.1 | 98 | WP_013576096.1 | 98 | WP_015697803.1 | 96 |
ND, not determined; NA, not available.