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. 2022 Apr 18;17(4):e0263057. doi: 10.1371/journal.pone.0263057

Table 1. Abbreviations for semantic web technologies used to harmonize the biological interaction information from WikiPathways.

Abbreviation Full Name/Meaning
GPML Graphical Pathway Markup Language
GPMLRDF RDF for Graphical Pathway Markup Language
MIM Molecular Interaction Map
RDF Resource Description Framework
SBGN Systems Biology Graphical Notation
ShEx Shape Expressions
SPARQL SPARQL Protocol and RDF Query Language
WikiPathways RDF The combination of GPMLRDF and WPRDF
WPRDF RDF for WikiPathways