Table 1. Abbreviations for semantic web technologies used to harmonize the biological interaction information from WikiPathways.
Abbreviation | Full Name/Meaning |
---|---|
GPML | Graphical Pathway Markup Language |
GPMLRDF | RDF for Graphical Pathway Markup Language |
MIM | Molecular Interaction Map |
RDF | Resource Description Framework |
SBGN | Systems Biology Graphical Notation |
ShEx | Shape Expressions |
SPARQL | SPARQL Protocol and RDF Query Language |
WikiPathways RDF | The combination of GPMLRDF and WPRDF |
WPRDF | RDF for WikiPathways |