Table 1.
Comparison of the SARS‐CoV‐2 PLpro kinetic parameters obtained using SPE‐MS with those reported.
|
|
Method |
Substrate |
/ [M−1 ⋅ s−1] |
[μM] |
|---|---|---|---|---|
|
1 |
SPE‐MS[a] |
nsp2/3 substrate 2 |
64980 ±15256 |
49.4 ±10.5 |
|
2 |
Fluorescence [5a] |
K48 linked Ub2‐Amc |
241000±94000 |
61.23 ±19.76 |
|
3 |
Fluorescence [5a] |
ISG15‐Amc |
521000±36000 |
8.50 ±0.54 |
|
4 |
Fluorescence [17b] |
RLRGG‐Amc |
1840 |
not reported |
|
5 |
Fluorescence [14] |
Cbz‐RLRGG‐Amc |
16000 |
6.9±1.4 |
|
6 |
Fluorescence [18] |
Cbz‐RLRGG‐Amc |
not reported |
70.92 ±10.15 |
|
7 |
Fluorescence polarization [5b] |
ISG15‐TAMRA |
30210 |
not reported |
|
8 |
Fluorescence polarization [5b] |
K48 linked Ub2‐TAMRA |
1634 |
not reported |
|
9 |
FRET [19] |
Dabcyl‐FTLKGGAPTKVTE‐Edans |
1074.6±261.9 |
not reported |
|
10 |
FRET [8a] |
Abz‐FTLKGGAPTKVT−Y(3NO2)R |
not reported |
1854 |
[a] Kinetic parameters were determined as described in the Supporting Information (Section 4), Michaelis Menten kinetics are shown in Supporting Figure S5; results are means of three independent runs (n=3; mean ±SD). Abz: 2‐aminobenzoyl. Amc: 7‐amino‐4‐methylcoumarin. Cbz: −C(O)OCH2Ph. Dabcyl: 4‐([4‐(dimethylamino)phenyl]azo)benzoic acid. Edans: 5‐((2‐aminoethyl)amino)naphthalene‐1‐sulfonic acid. TAMRA: Carboxytetramethylrhodamine.