TABLE 3.
The major biological processes related to the QTLs for LP.
| Biological process | The candidate genes (homologs) of the QTLs for LP |
|---|---|
| Hormone signaling and metabolism | ET: AIL6 (AP2), EIN3; BR: BZR1, LUT2; JA: TIFY10A; IAA: T85; CTK: MPK4; ABA: MYB52, KEG, PAA1, NET1D, NET3A |
| Calcium signaling | CPK17, CRCK2, CIPK6 |
| Signaling (e.g., MAPK) | ASK8, PPC4-2, At1g12280, HERK1, Gpr107 |
| Transcription factor | ZHD1, GhMYB4, GhMYB25, GhMYB25l, MYB52, GhMYB85, MYB86, GhMYB103, GbTCP, HDG11, GhHD-1, GhHD1, GhHOX1, VRN1, MYB308, ODO1, TTG1 |
| DNA replication | PAA1, GhAATF1, bsdc1, GhmTERF1 |
| Transcription | FRI, Bicc1, rpc11, At5g12190, SPP, SEN1, GhAATF1, GhmTERF1, GhH2A12, H2A |
| Translation | RPS10A, asnS, RPS1 |
| Cell division and cell wall development | MPK4, FLA12, NCD80, At3g43860, CAP1, GhWAKL3, GbPDF1, GhCOBL4, NDC80 |
| Substance transport | PHO1, TSC10B, COPT5, PRA1B1, UDP-GALT2, PYRAB13050, Gpr107, xpr1, bro1, G. hirsutum_D13G0342, TMN1, PLT5 |
| Energy metabolism | APL2, COX5B-2, CRR21, WAXY, At3g43860, G. hirsutum_D03G1407, Acot9, GhGRAM31, GRAM35, GRAM5 |
| Pollen wall development | TKPR1 |
| Metabolism | INO1, RHA2A, CYP78A7, bsdc1, DTX33, YLS8, ROD1, UGT80A2, RAB71, TXND9, GEML5 |
| Cytoplasmic organ | ATJ20 |
Note: ET, ethylene; BR, brassinosteroid; JA, jasmonate acid; IAA, auxin; CTK, cytokinesis; ABA, abscisic acid. The detailed information of the reported genes is listed in Supplementary Table S5.