Table 1.
ID | Major/minor allele | Primer (sequence 5′ to 3′) | Restrection Enzyme | PCR Restrection | RFLP fragments (bp) |
---|---|---|---|---|---|
rs17300539 | G/A |
F: 5′-AGGCTCTGTGTGGACTGTGGA-3′ R: 5′-CCTGGAGAACTGGAAGCTGC-3′ |
MspI | 296 |
AA = 296 GA = 129,167,296 GG = 129,167 |
rs266729 | G/C |
F: 5′-AGGCTCTGTGTGGACTGTGGA-3′ R: 5′-CCTGGAGAACTGGAAGCTGC-3’ |
HhaI | 296 |
CC = 296 GC = 113,183,296 GG = 113,183 |
rs1501299 | G/T |
F: 5’- GGCCTCTTTCATCACAGACC-3′ R: 5′-AGATGCAGCAAAGCCAAAGT-3’ |
BsmI | 196 |
TT = 196 GT = 50,146,196 GG = 50,146 |
rs17366743 | T/C |
F:5’-TAAGGGAGACATCGGTGAAAC-3′ R: 5′-TTACGCTCCTTCCCCATA −3’ |
Bst1107 | 438 |
CC = 438 TC = 104.334,438 TT = 104.334 |