REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
CD9 | Miltenyi Biotec | Cat# 130-108-813 |
CD63 | Miltenyi Biotec | Cat# 130-108-813 |
CD81 | Miltenyi Biotec | Cat# 130-108-813 |
CTLA-4 | BioLegend | Cat# 369612; RRID: AB_2632873 |
CD166 | Miltenyi Biotec | Cat# 130-106-576; RRID: AB_2655529 |
CD147 | BioLegend | Cat# 306214; RRID: AB_2750170 |
CD87 | Miltenyi Biotec | Cat# 130-114-851; RRID: AB_2726804 |
CD90 | BioLegend | Cat# 328114; RRID: AB_893431 |
CD47 | BioLegend | Cat# 323124; RRID: AB_2716203 |
CD38 | BioLegend | Cat# 303510; RRID: AB_314362 |
CD15 | BioLegend | Cat# 301908; RRID: AB_314200 |
CD171 | Miltenyi Biotec | Cat# 130-100-684; RRID: AB_2655584 |
CD49F | BioLegend | Cat# 313616; RRID: AB_1575047 |
VEGFR | Miltenyi Biotec | Cat# 130-093-601; AB_10828920 |
EGFR | BioLegend | Cat# 352906; AB_11150410 |
EGFRvIII | Novus Biologicals | Cat# NBP2-50599AF647; RRID: AB_2904021 |
CD140 | BioLegend | Cat# 323608; RRID: AB_2162787 |
CD10 | Miltenyi Biotec | Cat# 130-093-450; RRID: AB_10828545 |
CA9 | Miltenyi Biotec | Cat# 130-110-058; RRID: AB_2651327 |
CD314 | BioLegend | Cat# 320808; RRID: AB_492962 |
Biological samples | ||
Human cerebral spinal fluid | National Institutes of Health (Dr. Steven Jacobson, Dr. Jennifer Jones) | N/A |
Human plasma and serum | National Institutes of Health (Dr. Steven Jacobson, Dr. Jennifer Jones) | N/A |
Chemicals, peptides, and recombinant proteins | ||
Dulbecco Phosphate Buffered Saline | ThermoFisher Scientific | 14190144 |
RPMI 1640 Medium | ThermoFisher Scientific | 11875093 |
RPMI 1640 Medium (no phenol red) | ThermoFisher Scientific | 11835030 |
McCoy's 5A (Modified) Medium | ThermoFisher Scientific | 16600082 |
Critical commercial assays | ||
MACSPlex Exosome Kit, human | Miltenyi Biotec | 130-108-813 |
Deposited data | ||
Example database | This publication | https://doi.org/10.5281/zenodo.5725951 |
Experimental models: Cell lines | ||
PC3 | Laboratory of Hisataka Kobayashi, NCI, NIH | N/A |
PC3pip | Laboratory of Hisataka Kobayashi, NCI, NIH | N/A |
U87 | Laboratory of Kevin Camphausen, NCI, NIH | N/A |
U251 | Laboratory of Kevin Camphausen, NCI, NIH | N/A |
HCT116 wt | Laboratory of Curt Harris, NCI, NIH | N/A |
HCT116 mt | Laboratory of Curt Harris, NCI, NIH | N/A |
HCT116 -/- | Laboratory of Curt Harris, NCI, NIH | N/A |
UOK111 | Laboratory of W. Marston Linehan, NCI, NIH | N/A |
UOK151 | Laboratory of W. Marston Linehan, NCI, NIH | N/A |
Software and algorithms | ||
MATLAB | Mathworks, Inc | https://www.mathworks.com/ |
MPAPASS Software | NIH | Original Code https://zenodo.org/record/5725534#.YZ7r-b3MIUE Standalone Software https://nano.ccr.cancer.gov/mpapass/ |
Other | ||
qEVOriginal 70 nm | Izon Biosciences | N/A |
qEV-10 70 nm | Izon Biosciences | N/A |
JumboSep | PALL Corporation | FD100K65 |
Nanosight LM10 | Malvern | N/A |
CytoFLEX S | Beckman Coulter | N/A |
Aurora | Cytek Biosciences | N/A |
Optima XE ultracentrifuge | Beckman Coulter | B10049 |
45 titanium rotor | Beckman Coulter | 339160 |