REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited data
The Cancer Genome Atlas (TCGA)	Collins and Barker, 2007	(synapse.org/#!Synapse:syn3241074, Data Freeze 1.3.1)
COSMIC Cell Line Project (CCLP)	Hoadley et al., 2018; Tate et al., 2019	cancer.sanger.ac.uk/cell_lines
Cell Model Passports	van der Meer et al., 2019	https://cellmodelpassports.sanger.ac.uk
Cellosaurus	Bairoch, 2018	https://web.expasy.org/cellosaurus/
Data Matrices used in this paper	This Paper	Zenodo (https://doi.org/10.5281/zenodo.4627644).
Software and algorithms
ANNOVAR	Wang et al., 2010	https://annovar.openbioinformatics.org/en/latest/
GISTIC2	Mermel et al., 2011	https://www.genepattern.org/modules/docs/GISTIC_2.0
TumorComparer	This Paper	http://projects.sanderlab.org/tumorcomparer; https://github.com/sanderlab/tumorcomparer