TABLE 2.
Summary of screening sizes and hit rates of TB-WCSs
Process | Targeta | Organism | No. of compounds screened | Concn | Hit rate (%) | Agarb | Reference(s) |
---|---|---|---|---|---|---|---|
QS | LasR | P. aeruginosa | 200,000 | 33 μM | 0.01 | N | 30 |
MvfR | P. aeruginosa | 284,256 | 50 μg/mL | 0.19 | N | 31 | |
Pantothenate biosynthesis | PanC | M. tuberculosis | 13,549 | 0.27 | N | 32 | |
Proteome housekeeping | ClpP1P2 | M. tuberculosis | 503,879 | 10 μM | 0.04 | N | 19 |
Purine biosynthesis | GuaB2 | M. tuberculosis | 10,000 | 1 and 10 μM | 2.56c | N | 33 |
Secretion | Tat | E. coli | 389,481 | 5–20 μM | 0.016–0.6 | N | 39 |
T3SS | Y. pestis | 70,966 | ∼17 μg/mL | 0.6 | N | 37 | |
P. aeruginosa | 80,000 | 50 μM | 0.4 | N | 36 | ||
S. enterica | 92,000 | ∼160 μg/mL | 0.097 | N | 38 | ||
T2SS | P. aeruginosa | 75,000 | 50 μM | 0.15 | N | 40 | |
P. aeruginosa | 83,986 | 0.17 | N | 41 | |||
A. baumannii | 6,400 | 10 μM | 3c | N | 43 | ||
P. aeruginosa | 40,000 | 10–20 μM | 0.15 | N | 42 | ||
PG biogenesis | SAV1754 | S. aureus | 8 μM | N | 44 | ||
MreB | E. coli | 690,000 | 25 μM | 0.006–0.01 | N | 46 | |
WTA synthesis | TarG | S. aureus | 55,000 | 38 μM | 0.08 | N | 20 |
TarG | S. aureus | 20,000 | 3 and 16 μM | 0.02 | N | 48 | |
UppS | S. aureus | 1,600 | 20 μM | 4.25c | N | 50 | |
DltB | S. aureus | 258,000 | 15 μM | 0.08 | N | 16 | |
Oxidative protein folding | DsbB | E. coli, P. aeruginosa | 342,109 | 16–33 μM | 0.015 | Y | 51, 52 |
VKOR | M. tuberculosis | 342,109 | 16–33 μM | 0.06–0.27 | Y | 51, 52 | |
LPS biogenesis | MsbA | A. baumannii | 150,000 | 5 μM | 0.007 | N | 54 |
For pathway-directed screens, a target (underlined) of the most promising inhibitor in the screen was selected. However, these screens could detect inhibitors in other steps of the pathway or its regulation.
Agar-based versus liquid-based screens. Y, yes; N, no.
Higher hit rates are likely due to the use of preselected libraries known to target M. tuberculosis (first case) or the size of the libraries tested (second and third cases).