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. 2022 Apr 19;22(Suppl 15):625. doi: 10.1186/s12859-022-04668-0

Table 4.

Results on NCBI catalogs depending on sequencing technology

Technology MALVIRUS bcftools lofreq
Precision Recall Precision Recall Precision Recall
ILL .991 .961 .942 .899 .775 .817
ONT .792 .946 .731 .980 .680 .845

We report the precision and recall achieved by MALVIRUS, BCFtools, and lofreq in calling the variations available in the default catalog (NCBI catalog, Pipeline B, minlin=50, maxlin=100). The results are shown in terms of average over all the considered samples aggregated by sequencing technology. We highlighted in bold the best results