TABLE 2.
List of the genes covered by the oncomine comprehensive assay (OCAv3)
| Hotspot genes | Full length genes | Copy number genes | Gene fusions (intergenic and intragenic) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| AKT1 | FGFR1 | KRAS | PIK3CA | ARID1A | NOTCH2 | AKT1 | FGFR3 | AKT2 | MYB |
| AKT2 | FGFR2 | MAGOH | PIK3CB | ATM | NOTCH3 | AKT2 | FGFR4 | ALK | MYBL1 |
| AKT3 | FGFR3 | MAP2K1 | PPP2R1A | ATR | PALB2 | AKT3 | FLT3 | AR | NF1 |
| ALK | FGFR4 | MAP2K2 | PTPN11 | ATRX | PIK3R1 | ALK | IGF1R | AXL | NOTCH1 |
| ARAF | FLT3 | MAP2K4 | RAC1 | BAP1 | PMS2 | AR | KIT | BRAF | NOTCH4 |
| AXL | FOXL2 | MAPK1 | RAF1 | BRCA1 | POLE | AXL | KRAS | BRCA1 | NRG |
| BRAF | GATA2 | MAX | RET | BRCA2 | PTCH1 | BRAF | MDM2 | BRCA2 | NTRK1 |
| BTK | GNA11 | MDM4 | RHEB | CDKN2A | PTEN | CCND1 | MDM4 | CDKN2A | NTRK2 |
| CBL | GNAQ | MED12 | RHOA | CDK12 | RAD50 | CCND2 | MET | EGFR | NTRK3 |
| CCND1 | GNAS | MET | ROS1 | CDKN1B | RAD51 | CCND3 | MYC | ERBB2 | NUTM1 |
| CDK4 | HIST1h3B | MTOR | SF3B1 | CDKN2B | RAD51B | CCNE1 | MYCL | ERBB4 | PDGFRA |
| CDK6 | HNF1A | MYC | SMAD4 | CHEK1 | RAD51C | CDK2 | MYCN | ERG | PDGFRB |
| CHEK2 | HRAS | MYCN | SMO | CREBBP | RAD51D | CDK4 | NTRK1 | ESR1 | PIK3CA |
| CSF1R | H3F3A | MYD88 | SPOP | FANCA | RB1 | CDK6 | NTRK2 | ETV1 | PRKACB |
| CTNNB1 | IDH1 | NFE2L2 | SRC | FANCD2 | RNF43 | CDKN2A | NTRK3 | ETV4 | PPARG |
| DDR2 | IDH2 | NRAS | STAT3 | FBXW7 | SETD2 | CDKN2B | PDGFRA | ETV5 | PTEN |
| EGFR | JAK1 | NTRK1 | TERT | MLH1 | SLX4 | EGFR | PDGFRB | FGFR1 | RAD51B |
| ERBB2 | JAK2 | PDGRFA | TOP1 | MRE11A | SMARCA4 | ERB2 | PIK3CA | FGFR2 | RAF1 |
| ERBB3 | JAK3 | PDGFRB | U2AF1 | MSH2 | SMARCB1 | ESR1 | PIK3CB | FGFR3 | RB1 |
| ERBB4 | KDR | XPO1 | MSH6 | STK11 | FGF19 | PPARG | FGR | RELA | |
| ERCC2 | KIT | NBN | TP53 | FGF3 | RICTOR | FLT3 | RET | ||
| ESR1 | KNSTRN | NF1 | TSC1 | FGFR1 | TERT | JAK2 | ROS1 | ||
| EZH2 | NF2 | TSC2 | FGFR2 | TSC1 | KRAS | RSPO2 | |||
| NOTCH1 | TSC2 | MDM4 | RSPO3 | ||||||
| MET | TERT | ||||||||