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. 2022 Apr 19;13:2047. doi: 10.1038/s41467-022-29584-y

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — A Primary analysis outline. B Assembly partitioned into RepeatClassifier/RepeatMasker major and minor classes; 54% of non-gap base pairs are covered by repeat superfamilies (SFs), and transposable elements (TEs) are prevalent. C Unsupervised comparisons of how the 1193 individual SFs each with ≥20 kbp distribute across chromosomes (Supplementary Figs. 13 and 14) suggest the primary distributional diversity at chromosome scale is proximity to centromeres (green, 74 SFs totaling 27 Mbp) vs. telomeres (red, 58 SFs totaling 11 Mbp) vs. more-or-less uniformity (gray, 1061 SFs totaling 406 Mbp). D Chromosomal distribution of selected SFs and sets of SFs, illustrating the diversity across and within the trichotomy of C. The y-axis in each row is linear number of member base pairs in 3 Mbp bins every 1 Mbp, with zero at the lower edge and 95th percentile (or row maximum if the percentile is zero) at the upper edge. Black rows near the bottom are the representative SFs of Fig. 5E–G.