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Comparison of the single-nucleotide polymorphism-based strain typing results of short-read next-generation sequencing (SR-NGS) and long-read next-generation sequencing (LR-NGS) for vancomycin-resistant Enterococcus faecium. (A) and (B) depict the maximum-likelihood phylogenies constructed using SR- and LR-NGS, respectively. The heatmaps on the right show the van gene clusters. (C) shows a tanglegram of the two phylogenetic trees.
