Table 1.
Results of multiple assays and WGS of Cepheid Xpert® Xpress SARS-CoV-2 presumptive positive samples.
| Sample ID | N gene mutation | Collection date | Xpert E/N2Ct | BD Max N1/N2 | ePlex | PANGO lineage | NextClade | Genome coverage | Coverage depth |
|---|---|---|---|---|---|---|---|---|---|
| PV2_93 | C29200T | 8/24/21 | 21/0 | 18/19 | + | AY. 24 | 21A (Delta) | 99.78% | 21846 |
| PV2_94 | C29200T | 8/29/21 | 15/0 | 11/13 | + | B.1.617. 2 | 21A (Delta) | 99.78% | 5601 |
| PV2_39 | C29203T | 7/23/21 | 14/0 | 11/13 | + | AY. 3 | 21A (Delta) | 99.78% | 17117 |
| PV2_95 | C29203T | 9/2/21 | 17/0 | 15/16 | + | AY. 3 | 21A (Delta) | 99.78% | 6155 |