Table 2.
List of bioinformatics resources used in the prediction and analysis of ncRNAs.
| Tool Name | Description | References |
|---|---|---|
| miRanalyzer | miRNA detection tool for NGS experiments | [224] |
| miRTools | Toolbox for miRNA discovery and profiling | [225] |
| miRiadne | Tool for integrating the miRNA nomenclature | [226] |
| miRBase | Database of miRNA sequence and annotation | [227] |
| DIANA-mirGen | A tool to index promoters and regulator for miRNA | [228] |
| miRStart | miRNA’s Transcription Start Sites database | [229] |
| miRWalk 2.0 | Tool to predict miRNA-target interaction using Artificial intelligence algorithm | [229] |
| MatureBayes | miRNA-target prediction tool | [230] |
| miRanda | Tool to predict miRNA target using free energy feature | [231] |
| LNCipedia | lncRNA database | [232] |
| LNCBook | lncRNA database | [233] |
| LncDisease | lncRNA-disease associations predicting tool | [234] |
| NONCODE | Integrated knowledge database for ncRNA research | [235] |
| StarBase v2.0 | Tool to predict miRNA-ceRNA interaction | [236] |
| NRED | Database for expression information of lncRNAs | [237] |
| Circ2Traits | Toolbox for circularRNA discovery and analysis | [238] |
| CircRNABase | Tool to predict miRNA-circRNA interaction | [239] |
| circBase | circularRNA database | [240] |
| Circtools | Toolbox for circularRNA research | [241] |
| CircMarker | Tool for circularRNA detection | [242] |