Table 3.
Annotated candidate genes in RW chickens, presumably associated with their adaptation to low temperatures (genes in bold type are the most relevant candidate genes).
| GGA | Region (Mb) | Breed | Genes |
|---|---|---|---|
| 1 | 18.07…20.85 | RW | CRELD2, ALG12, MLC1, IL17REL, TRABD, MAPK11, MAPK12, PLXNB2 |
| 143.35…145.21 | RW | SLC10A2, METTL21C, FGF14, NALCN | |
| 2 | 26.01…27.01 | RW | NDUFA4 |
| 47.88…48.93 | RW | FKBP9, PDE1C, PPP1R17, NEUROD6 | |
| Amroks | |||
| 54.86…56.83 | RW | IGFBP1, IGFBP3, NFX1, LRRC14B, RECK, RBFA, HSBP1L1, NFATC1, HNF4G, IL7 | |
| 122.18…126.07 | RW | WWP1, ATP6V0D2, DECR1, RIPK2, OSGIN2, NECAB1, RUNX1T1 | |
| 3 | 36.71…39.95 | RW | RYR2, MIR, GPR137B, ERO1B, EDARADD, LGALS8, GGPS1,COA6, DISC1 |
| 81.27…84.12 | RW | CD109, CGAS, MTO1, OGFRL1, B3GAT2, FAM135A | |
| 4 | 17.82…19.76 | RW | RNF128, HMGB3, MTM1 |
| 5 | 2.14…4.51 | RW, Amroks | PRMT3, NELL1, ANO5, SLC17A6, GAS2, SLC5A12, FIBIN, LGR4, BDNF |
| 6 | 16.65…17.20 | RW | CAMC2G, MYOZ1, SORBS1 |
| 7 | 13.18…14.51 | RW, Amroks | CTLA4, ICOS, CD28, NBEAL1, IDH1, PIKFYVE, PPP1R1C |
| 9 | 5.13…5.88 | RW | HDLBP, STK25, ETV5, DGKG, TRPM2, ADIPOQ, GPR55, CAB39, HES6, PIK3CB |
| 11 |
2.35…2.62 10.20…10.82 |
RW, Amroks |
HSF4, MBTPS1, NECAB2 CEBPG, KCTD15 |
| 13 | 4.43…5.43 | RW, Amroks | KCNIP1, KCNMB1, LCP2, DOCK2 |
| 15 | 1.30…2.61 | RW | TXNRD2, COMT, ZDHHC8, DGCR8, PGAM5 |
| 18 | 9.13…10.86 | RW | TSPAN10, SLC38A10, NPTX1, USP36, ENGASE, SOCS3, TK1, TMC6, AFMID, GCGR, SIRT7, RYCR1, SPAG9, NPB, CACNA1G, WFIKKN2, ACSF2, CD300LG, LRRC59, FADDS6, MIF4CD, KCTD2 |