| 2B-PLS | Two-block partial least squares |
| ABA | Abscisic acid |
| AP2 | APETALA2 |
| ARID | AT-rich interaction domain |
| bZIP | Basic leucine zipper domain |
| BZR | Brassinazole-resistant family |
| C2H2 | Cys2His2 |
| CPM | Counts per million |
| DAP-seq | DNA affinity purification sequencing |
| DEG | Differentially expressed gene |
| ELIP | Early light-induced protein |
| EREBP | Ethylene-responsive element binding protein |
| FDR | False discovery rate |
| GEO NCBI | Gene Expression Omnibus National Center for Biotechnology Information |
| GO | Gene ontology |
| HB | Homeobox family |
| HSF | Heat stress transcription factor family |
| JA | Jasmonic acid |
| PAI | Phylostratigraphic age index |
| PIF | Phytochrome interacting factor |
| PPFD | Photosynthetic photon flux density |
| ROS | Reactive oxygen species |
| TF | Transcription factor |
| UV-B | Ultraviolet B |
| UVR8 | UV-B resistance 8 |
| ZF-HD | Zinc finger homeobox family protein |