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. 2022 Mar 31;11(4):425. doi: 10.3390/pathogens11040425

Table 3.

Population genetic diversity indices per study and per locus. Mean and Standard error (SE) of expected heterozygosity (He), number of alleles detected (A), allelic richness (Ar), mean inbreeding coefficient (Fis).

Locus Sh9 Sh3 C102 Sh1 Sh14 Sh6 C111 Sh7 Sh13 Sh11 Sh2 Sh5 Sh10 Sh12 Mean SE
Site 1 n = 74
He 0.633 0.824 0.000 0.704 0.875 0.365 0.608 0.560 0.696 0.454 0.877 0.841 0.536 0.335 0.593 0.247
A 5 10 1 6 11 5 5 4 8 5 10 9 7 4 6.429 2.848
Ar 4.590 9.603 1.000 5.550 10.934 4.947 4.645 3.636 7.330 4.980 9.574 8.710 6.014 3.956 6.105 2.774
Fis 0.569 0.241 NA 0.177 0.082 0.273 0.088 0.377 −0.026 0.416 0.411 0.415 0.501 0.048 0.275 0.196
Site 2 n = 206
He 0.624 0.860 0.025 0.659 0.883 0.335 0.636 0.677 0.710 0.480 0.821 0.821 0.365 0.473 0.598 0.241
A 11 11 2 6 12 6 6 4 10 5 12 13 8 5 7.929 3.518
Ar 7.111 9.906 1.694 5.502 11.469 4.337 4.960 4.000 7.839 4.465 10.851 10.045 5.225 4.212 6.544 3.017
Fis 0.414 0.116 −0.010 0.013 0.063 0.090 0.039 0.468 −0.010 0.411 0.264 0.423 0.219 −0.086 0.172 0.191
Site 3 n = 219
He 0.698 0.801 0.331 0.624 0.767 0.360 0.630 0.656 0.656 0.231 0.833 0.875 0.326 0.136 0.566 0.241
A 9 14 7 12 10 5 6 5 11 5 12 13 6 5 8.571 3.368
Ar 6.925 10.399 5.671 8.790 8.091 3.698 5.003 4.623 9.302 3.715 10.252 12.187 4.802 3.541 6.929 2.890
Fis 0.363 0.107 0.130 −0.006 0.151 0.344 0.108 0.094 0.103 0.562 0.335 0.202 0.399 0.158 0.218 0.157
Site 4 n = 76
He 0.583 0.885 0.039 0.675 0.865 0.419 0.602 0.579 0.652 0.580 0.796 0.821 0.308 0.409 0.587 0.235
A 5 11 3 6 12 5 6 4 8 5 11 9 5 4 6.714 2.946
Ar 4.683 10.865 2.354 5.831 11.624 4.757 5.418 3.863 7.602 4.675 10.836 8.517 4.322 3.934 6.377 2.986
Fis 0.216 0.135 −0.009 −0.015 0.183 0.040 0.145 0.330 −0.062 0.655 0.392 0.513 0.333 −0.033 0.202 0.219
Site 7 n = 77
He 0.585 0.781 0.208 0.569 0.731 0.000 0.659 0.534 0.822 0.194 0.750 0.758 0.666 0.703 0.569 0.253
A 8 9 2 5 7 1 6 3 11 2 7 7 7 4 5.643 2.925
Ar 6.624 8.526 2.000 4.714 6.506 1.000 5.133 2.998 9.906 2.000 5.969 6.680 6.897 4.000 5.211 2.591
Fis 0.399 0.179 0.126 0.214 0.088 NA 0.262 1.000 0.083 0.525 −0.167 0.330 0.675 0.196 0.301 0.298
Site8 n = 90
He 0.732 0.802 0.163 0.525 0.673 0.000 0.629 0.509 0.736 0.229 0.711 0.671 0.677 0.664 0.552 0.245
A 9 8 2 5 7 1 4 4 5 4 7 8 9 7 5.714 2.525
Ar 8.112 7.737 2.000 4.448 6.387 1.000 3.859 3.669 4.999 3.424 6.643 7.285 7.628 6.179 5.241 2.242
Fis 0.700 0.213 −0.092 0.102 −0.008 NA 0.043 0.690 0.233 0.630 −0.102 0.109 0.636 0.089 0.249 0.300
Site 9 n = 87
He 0.755 0.778 0.269 0.457 0.702 0.000 0.578 0.400 0.771 0.052 0.737 0.714 0.494 0.667 0.527 0.263
A 8 8 2 5 6 1 4 2 6 2 7 8 7 6 5.143 2.507
Ar 7.445 7.121 2.000 3.973 5.971 1.000 3.488 2.000 5.518 1.983 6.718 6.826 6.302 5.709 4.718 2.245
Fis 0.470 0.044 0.081 −0.080 −0.043 NA 0.376 0.826 0.408 −0.018 −0.192 0.159 0.349 0.104 0.191 0.275
Site 10 n = 77
He 0.761 0.762 0.232 0.534 0.677 0.000 0.567 0.490 0.766 0.262 0.787 0.727 0.702 0.704 0.569 0.244
A 8 8 3 3 8 1 5 2 7 3 8 6 8 6 5.429 2.563
Ar 7.334 7.561 2.553 3.000 7.071 1.000 4.120 2.000 6.151 2.667 7.614 5.856 7.568 5.791 5.020 2.379
Fis 0.371 0.075 0.092 0.241 −0.113 NA 0.201 0.819 0.231 0.697 −0.059 0.089 0.719 0.105 0.267 0.298
Site 11 n = 61
He 0.747 0.768 0.242 0.692 0.677 0.075 0.557 0.551 0.763 0.406 0.776 0.723 0.593 0.696 0.590 0.213
A 9 9 2 4 6 4 4 3 9 2 8 9 8 5 5.857 2.742
Ar 8.542 8.910 2.000 4.000 5.962 3.543 3.700 3.000 10.162 2.000 7.439 8.736 7.466 4.999 5.747 2.779
Fis 0.596 0.030 0.256 0.261 0.091 0.494 0.281 0.637 −0.063 0.707 −0.013 0.202 0.603 0.116 0.300 0.262
Site 12 n = 169
He 0.760 0.752 0.200 0.619 0.725 0.045 0.608 0.420 0.816 0.123 0.738 0.712 0.468 0.728 0.551 0.259
A 10 11 4 6 7 2 5 4 11 3 8 9 8 7 6.786 2.914
Ar 7.487 8.692 3.555 4.973 6.448 1.895 4.220 3.188 9.908 2.340 6.648 7.411 6.542 4.797 5.579 2.401
Fis 0.513 0.167 0.038 0.134 −0.025 0.855 0.147 0.836 0.020 0.471 −0.034 0.174 0.665 −0.000 0.283 0.321
Total (n = 1136)