Table 3.
Population genetic diversity indices per study and per locus. Mean and Standard error (SE) of expected heterozygosity (He), number of alleles detected (A), allelic richness (Ar), mean inbreeding coefficient (Fis).
Locus | Sh9 | Sh3 | C102 | Sh1 | Sh14 | Sh6 | C111 | Sh7 | Sh13 | Sh11 | Sh2 | Sh5 | Sh10 | Sh12 | Mean | SE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Site 1 n = 74 | ||||||||||||||||
He | 0.633 | 0.824 | 0.000 | 0.704 | 0.875 | 0.365 | 0.608 | 0.560 | 0.696 | 0.454 | 0.877 | 0.841 | 0.536 | 0.335 | 0.593 | 0.247 |
A | 5 | 10 | 1 | 6 | 11 | 5 | 5 | 4 | 8 | 5 | 10 | 9 | 7 | 4 | 6.429 | 2.848 |
Ar | 4.590 | 9.603 | 1.000 | 5.550 | 10.934 | 4.947 | 4.645 | 3.636 | 7.330 | 4.980 | 9.574 | 8.710 | 6.014 | 3.956 | 6.105 | 2.774 |
Fis | 0.569 | 0.241 | NA | 0.177 | 0.082 | 0.273 | 0.088 | 0.377 | −0.026 | 0.416 | 0.411 | 0.415 | 0.501 | 0.048 | 0.275 | 0.196 |
Site 2 n = 206 | ||||||||||||||||
He | 0.624 | 0.860 | 0.025 | 0.659 | 0.883 | 0.335 | 0.636 | 0.677 | 0.710 | 0.480 | 0.821 | 0.821 | 0.365 | 0.473 | 0.598 | 0.241 |
A | 11 | 11 | 2 | 6 | 12 | 6 | 6 | 4 | 10 | 5 | 12 | 13 | 8 | 5 | 7.929 | 3.518 |
Ar | 7.111 | 9.906 | 1.694 | 5.502 | 11.469 | 4.337 | 4.960 | 4.000 | 7.839 | 4.465 | 10.851 | 10.045 | 5.225 | 4.212 | 6.544 | 3.017 |
Fis | 0.414 | 0.116 | −0.010 | 0.013 | 0.063 | 0.090 | 0.039 | 0.468 | −0.010 | 0.411 | 0.264 | 0.423 | 0.219 | −0.086 | 0.172 | 0.191 |
Site 3 n = 219 | ||||||||||||||||
He | 0.698 | 0.801 | 0.331 | 0.624 | 0.767 | 0.360 | 0.630 | 0.656 | 0.656 | 0.231 | 0.833 | 0.875 | 0.326 | 0.136 | 0.566 | 0.241 |
A | 9 | 14 | 7 | 12 | 10 | 5 | 6 | 5 | 11 | 5 | 12 | 13 | 6 | 5 | 8.571 | 3.368 |
Ar | 6.925 | 10.399 | 5.671 | 8.790 | 8.091 | 3.698 | 5.003 | 4.623 | 9.302 | 3.715 | 10.252 | 12.187 | 4.802 | 3.541 | 6.929 | 2.890 |
Fis | 0.363 | 0.107 | 0.130 | −0.006 | 0.151 | 0.344 | 0.108 | 0.094 | 0.103 | 0.562 | 0.335 | 0.202 | 0.399 | 0.158 | 0.218 | 0.157 |
Site 4 n = 76 | ||||||||||||||||
He | 0.583 | 0.885 | 0.039 | 0.675 | 0.865 | 0.419 | 0.602 | 0.579 | 0.652 | 0.580 | 0.796 | 0.821 | 0.308 | 0.409 | 0.587 | 0.235 |
A | 5 | 11 | 3 | 6 | 12 | 5 | 6 | 4 | 8 | 5 | 11 | 9 | 5 | 4 | 6.714 | 2.946 |
Ar | 4.683 | 10.865 | 2.354 | 5.831 | 11.624 | 4.757 | 5.418 | 3.863 | 7.602 | 4.675 | 10.836 | 8.517 | 4.322 | 3.934 | 6.377 | 2.986 |
Fis | 0.216 | 0.135 | −0.009 | −0.015 | 0.183 | 0.040 | 0.145 | 0.330 | −0.062 | 0.655 | 0.392 | 0.513 | 0.333 | −0.033 | 0.202 | 0.219 |
Site 7 n = 77 | ||||||||||||||||
He | 0.585 | 0.781 | 0.208 | 0.569 | 0.731 | 0.000 | 0.659 | 0.534 | 0.822 | 0.194 | 0.750 | 0.758 | 0.666 | 0.703 | 0.569 | 0.253 |
A | 8 | 9 | 2 | 5 | 7 | 1 | 6 | 3 | 11 | 2 | 7 | 7 | 7 | 4 | 5.643 | 2.925 |
Ar | 6.624 | 8.526 | 2.000 | 4.714 | 6.506 | 1.000 | 5.133 | 2.998 | 9.906 | 2.000 | 5.969 | 6.680 | 6.897 | 4.000 | 5.211 | 2.591 |
Fis | 0.399 | 0.179 | 0.126 | 0.214 | 0.088 | NA | 0.262 | 1.000 | 0.083 | 0.525 | −0.167 | 0.330 | 0.675 | 0.196 | 0.301 | 0.298 |
Site8 n = 90 | ||||||||||||||||
He | 0.732 | 0.802 | 0.163 | 0.525 | 0.673 | 0.000 | 0.629 | 0.509 | 0.736 | 0.229 | 0.711 | 0.671 | 0.677 | 0.664 | 0.552 | 0.245 |
A | 9 | 8 | 2 | 5 | 7 | 1 | 4 | 4 | 5 | 4 | 7 | 8 | 9 | 7 | 5.714 | 2.525 |
Ar | 8.112 | 7.737 | 2.000 | 4.448 | 6.387 | 1.000 | 3.859 | 3.669 | 4.999 | 3.424 | 6.643 | 7.285 | 7.628 | 6.179 | 5.241 | 2.242 |
Fis | 0.700 | 0.213 | −0.092 | 0.102 | −0.008 | NA | 0.043 | 0.690 | 0.233 | 0.630 | −0.102 | 0.109 | 0.636 | 0.089 | 0.249 | 0.300 |
Site 9 n = 87 | ||||||||||||||||
He | 0.755 | 0.778 | 0.269 | 0.457 | 0.702 | 0.000 | 0.578 | 0.400 | 0.771 | 0.052 | 0.737 | 0.714 | 0.494 | 0.667 | 0.527 | 0.263 |
A | 8 | 8 | 2 | 5 | 6 | 1 | 4 | 2 | 6 | 2 | 7 | 8 | 7 | 6 | 5.143 | 2.507 |
Ar | 7.445 | 7.121 | 2.000 | 3.973 | 5.971 | 1.000 | 3.488 | 2.000 | 5.518 | 1.983 | 6.718 | 6.826 | 6.302 | 5.709 | 4.718 | 2.245 |
Fis | 0.470 | 0.044 | 0.081 | −0.080 | −0.043 | NA | 0.376 | 0.826 | 0.408 | −0.018 | −0.192 | 0.159 | 0.349 | 0.104 | 0.191 | 0.275 |
Site 10 n = 77 | ||||||||||||||||
He | 0.761 | 0.762 | 0.232 | 0.534 | 0.677 | 0.000 | 0.567 | 0.490 | 0.766 | 0.262 | 0.787 | 0.727 | 0.702 | 0.704 | 0.569 | 0.244 |
A | 8 | 8 | 3 | 3 | 8 | 1 | 5 | 2 | 7 | 3 | 8 | 6 | 8 | 6 | 5.429 | 2.563 |
Ar | 7.334 | 7.561 | 2.553 | 3.000 | 7.071 | 1.000 | 4.120 | 2.000 | 6.151 | 2.667 | 7.614 | 5.856 | 7.568 | 5.791 | 5.020 | 2.379 |
Fis | 0.371 | 0.075 | 0.092 | 0.241 | −0.113 | NA | 0.201 | 0.819 | 0.231 | 0.697 | −0.059 | 0.089 | 0.719 | 0.105 | 0.267 | 0.298 |
Site 11 n = 61 | ||||||||||||||||
He | 0.747 | 0.768 | 0.242 | 0.692 | 0.677 | 0.075 | 0.557 | 0.551 | 0.763 | 0.406 | 0.776 | 0.723 | 0.593 | 0.696 | 0.590 | 0.213 |
A | 9 | 9 | 2 | 4 | 6 | 4 | 4 | 3 | 9 | 2 | 8 | 9 | 8 | 5 | 5.857 | 2.742 |
Ar | 8.542 | 8.910 | 2.000 | 4.000 | 5.962 | 3.543 | 3.700 | 3.000 | 10.162 | 2.000 | 7.439 | 8.736 | 7.466 | 4.999 | 5.747 | 2.779 |
Fis | 0.596 | 0.030 | 0.256 | 0.261 | 0.091 | 0.494 | 0.281 | 0.637 | −0.063 | 0.707 | −0.013 | 0.202 | 0.603 | 0.116 | 0.300 | 0.262 |
Site 12 n = 169 | ||||||||||||||||
He | 0.760 | 0.752 | 0.200 | 0.619 | 0.725 | 0.045 | 0.608 | 0.420 | 0.816 | 0.123 | 0.738 | 0.712 | 0.468 | 0.728 | 0.551 | 0.259 |
A | 10 | 11 | 4 | 6 | 7 | 2 | 5 | 4 | 11 | 3 | 8 | 9 | 8 | 7 | 6.786 | 2.914 |
Ar | 7.487 | 8.692 | 3.555 | 4.973 | 6.448 | 1.895 | 4.220 | 3.188 | 9.908 | 2.340 | 6.648 | 7.411 | 6.542 | 4.797 | 5.579 | 2.401 |
Fis | 0.513 | 0.167 | 0.038 | 0.134 | −0.025 | 0.855 | 0.147 | 0.836 | 0.020 | 0.471 | −0.034 | 0.174 | 0.665 | −0.000 | 0.283 | 0.321 |
Total (n = 1136) |