Table 1.
Genomic data from Rhodotorula species.
| Reference | This Study | This Study | [11] | [13] | [3] | [15] |
|---|---|---|---|---|---|---|
| Strain number | R. babjevae CBS 7808 | R. babjevae DBVPG 8058 | R. graminis WP1 | R. glutinis ZHK | R. toruloides CBS 14 | R. toruloides NP11 |
| Genome size (Mbp) | 21.9 | 21.5 | 21.0 | 21.8 | 20.5 | 20.2 |
| Coverage | 2058 | 2122 | 8.6 | 470 | 1514 | 96 |
| GC content (%) | 68.23 | 68.24 | 67.76 | 67.8 | 61.83 | 62.05 |
| Bases masked (%) | 5.93 | 6.73 | 6.5 | NA | 2.01 | 2.53 |
| No. Scaffolds | 3 | 1 | 26 | 30 | 3 | 34 |
| No. Contigs | 24 | 33 | 325 | NA | 23 | NA |
| Protein-coding genes | 7591 | 7481 | 7283 a | 6774 a | 9464 | 8171 |
| Avg. no. exons per gene | 4.0 | 3.9 | 6.2 | NA | 5.9 | NA |
| Sequencing platform | Nanopore and Illumina | Nanopore and Illumina | Sanger | PacBio and Illumina | Nanopore and Illumina | Illumina and Sanger |
NA—not available; a—refers to predicted genes.