Table 1.
Gene classification of chloroplast genome in M. zhaojiaoensis.
| Gene Function | Gene Group | Code | Gene Number | Gene Name |
|---|---|---|---|---|
| Photosynthesis | Subunits of ATP synthase | atp | 6 (6) | atpA, atpB, atpE, atpF, atpH, atpI |
| Subunits of photosystem II | psb | 15 (15) | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Subunits of NADH-dehydrogenase | ndh | 11 (12) | ndhA, ndhB (×2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Subunits of cytochrome b/f complex | pet | 6 (6) | petA, petB, petD, petG, petL, petN | |
| Subunits of photosystem I | psa | 5 (5) | psaA, psaB, psaC, psaI, psaJ | |
| Subunit of rubisco | rbc | 1 (1) | rbcL | |
| Self replication | Large subunit of ribosome | rpl | 9 (11) | rpl14, rpl16, rpl2 (×2), rpl20, rpl22, rpl23 (×2), rpl32, rpl33, rpl36 |
| DNA dependent RNA polymerase | rpo | 4 (4) | rpoA, rpoB, rpoC1, rpoC2 | |
| Small subunit of ribosome | rps | 12 (14) | rps11, rps12 (×2), rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps7 (×2), rps8 | |
| rRNA | rrn | 4 (8) | rrn4.5 (×2), rrn5 (×2), rrn16 (×2), rrn23 (×2) | |
| tRNA | trn | 29 (37) | trnA-UGC (×2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-UCC, trnH-GUG, trnI-CAU (×2), trnI-GAU (×2), trnK-UUU, trnL-CAA (×2), trnL-UAA, trnL-UAG, trnM-CAU (×2), trnN-GUU (×2), trnP-UGG, trnQ-UUG, trnR-ACG (×2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC (×2), trnV-UAC, trnW-CCA, trnY-GUA | |
| Others | Subunit of Acetyl-CoA-carboxylase | acc | 1 (1) | accD |
| c-type cytochrom synthesis gene | ccs | 1 (1) | ccsA | |
| Envelop membrane protein | cem | 1 (1) | cemA | |
| Protease | clp | 1 (1) | clpP | |
| Maturase | mat | 1 (1) | matK | |
| Unknown | Conserved open reading frames | ycf | 4 (5) | ycf1, ycf2 (×2), ycf3, ycf4 |
The number in parentheses in the fourth column is the total number of duplicates contained, and the fifth column (×2) refers to two copies of the gene.