Skip to main content
. 2022 Apr 15;14(8):2001. doi: 10.3390/cancers14082001

Table 4.

Results of Polyphen-2 score and prediction for the mapped mutations.

Gene Name Mutation Prediction Score Sensitivity Specificity
AMBP G238S Probably damaging 1.000 0.00 1.00
AMBP E192G Probably damaging 0.75 0.981 0.96
AMBP V69M Possibly damaging 0.758 0.85 0.92
AMBP A286G Probably damaging 1.000 0.00 1.00
AMBP P197S Benign 0.051 0.94 0.83
AMBP G338S Probably damaging 0.994 0.69 0.97
AMBP G341A Probably damaging 0.958 0.78 0.95
AMBP V313I Benign 0.025 0.95 0.81
AMBP G186R Probably damaging 1.000 0.00 1.00
AMBP R185Q Probably damaging 0.992 0.70 0.97
CDH1 H233R Possibly damaging 0.831 0.84 0.93
CDH1 A408E Possibly damaging 0.798 0.84 0.93
EFEMP1 V463M Probably damaging 0.999 0.14 0.99
HSPG2 V4332I Benign 0.001 0.99 0.15
HSPG2 A1503V Probably damaging 1.00 0.00 1.00
HSPG2 S970F Possibly damaging 0.498 0.88 0.90
HSPG2 M638V Benign 0.00 1.00 0.00
HSPG2 Q1062H Benign 0.00 1.00 0.00
ITIH4 R866C Probably damaging 1 0.00 1.00
ITIH4 G893S Benign 0.00 1.00 0.00
KLK3 C209Y Probably damaging 1.000 0.00 1.00
KLK3 G156V Probably damaging 1.000 0.00 1.00
KLK3 V55M Probably damaging 0.972 0.77 0.96
KLK3 S117P Possibly damaging 0.621 0.87 0.91
KLK3 G87R Benign 0.128 0.93 0.86
KLK3 L124F Probably damaging 1.000 0.00 1.00
KLK3 A154T Possibly damaging 0.657 0.86 0.91
KLK3 I 179T Possibly damaging 0.800 0.84 0.93
LMAN2 G250S Probably damaging 1.00 0.00 1.00
LMAN2 D229N Probably damaging 0.983 0.74 0.96
PTGDS L130M Probably damaging 1.00 0.00 1.00
ASAH1 V246A Benign 0.00 1.00 0.00
SOD3 A58T Benign 0.188 0.92 0.87
GSTP1 I105V Benign 0.00 1.00 0.00
SPP1 A22G Possibly damaging 0.611 0.87 0.91
ACP3 G68D Probably damaging 1.00 0.00 1.00
AZGP1 P187L Probably damaging 0.94 0.69 0.97
AZGP1 A46T Benign 0.002 0.99 0.30
SLC9B1 N70S Benign 0.036 0.94 0.82
ZNF624 S207F Benign 0.214 0.92 0.88
VASN R161Q Benign 0.019 0.95 0.80
CD55 S162L Probably damaging 0.990 0.72 0.97