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. 2022 Feb 9;135(4):1443–1455. doi: 10.1007/s00122-022-04045-8

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© The Author(s) 2022

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Fig. 3 — Allele frequencies for the representative markers (left) and summary of supporting markers in each group (right). Marked in red is the marker group containing candidate variants for the high-protein haplotype (M01). Each dot represents a SNP within a given marker group, for which is displayed the average protein difference between individuals who have the alternate vs reference allele, coloured white-purple by that site’s alternate allele frequency. All alternate alleles depicted are positively associated with seed protein, compared to the reference allele. REF refers to the frequency of homozygous reference alleles at the marker groups’ representative site, similarly for homozygous missing (MISS), heterozygous (HET), sites with one missing allele (HETMISS) and homozygous alternate alleles (ALT) (colour figure online)