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. 2022 Feb 20;121(7):1230–1245. doi: 10.1016/j.bpj.2022.02.030

Table 1.

Simulation parameters

Parameter Definition Value Unit Notes
a fiber radius 4 nm (38)
L fiber length 0.5,1 μm (39,40)
F number of fibers 200–1,600
Ld simulated volume’s extent 2–4 μm cubic unit cell
μ cytoplasm viscosity 0.1 Pa⋅s 100 × water (cytoplasm) (41)
κ fiber bending stiffness 0.07 pN⋅μm2 17 μm persistence length (22)
Kc CL spring stiffness 10 pN/μm (42)
CL rest length 50 nm (29)
kon CL first end binding rate 5 1/(μm⋅s) (3)
kon,s CL second end binding rate 50 1/(μm⋅s) kon,skon, not measured
koff CL (one end bound) unbinding rate 1 1/s (43,44)
koff,s CL (both ends bound) unbinding rate 1 1/s koff,s=koff
cw actin-binding site width 20 nm (29)
kBT thermal energy 4 × 10−3 pN⋅μm 25°C
N number of Chebyshev points 16 ((21), Sec. 6.3.1)
Δsu binding site spacing 0.026 μm (3)
Δt time step size 104 s limited by Kc