Table 1.
Simulation parameters
Parameter | Definition | Value | Unit | Notes |
---|---|---|---|---|
a | fiber radius | 4 | nm | (38) |
L | fiber length | μm | (39,40) | |
F | number of fibers | 200–1,600 | ||
simulated volume’s extent | 2–4 | μm | cubic unit cell | |
μ | cytoplasm viscosity | 0.1 | Pa⋅s | 100 water (cytoplasm) (41) |
κ | fiber bending stiffness | 0.07 | pN⋅m2 | 17 μm persistence length (22) |
CL spring stiffness | 10 | pN/μm | (42) | |
CL rest length | 50 | nm | (29) | |
CL first end binding rate | 5 | 1/(μm⋅s) | (3) | |
CL second end binding rate | 50 | 1/(μm⋅s) | , not measured | |
CL (one end bound) unbinding rate | 1 | 1/s | (43,44) | |
CL (both ends bound) unbinding rate | 1 | 1/s | ||
actin-binding site width | 20 | nm | (29) | |
thermal energy | 4 × 10−3 | pN⋅m | 25°C | |
N | number of Chebyshev points | 16 | ((21), Sec. 6.3.1) | |
binding site spacing | 0.026 | μm | (3) | |
time step size | s | limited by |