Fig. 5.

Stacked bar plots displaying impact of tandem repeat (TR) on the F1 scores of SV genotyping methods. a, b HG002 Tier 1 dataset. c, d HG002 Tier 2 dataset. e–i HG005 dataset. The x-axis represents SV genotyping methods, and the y-axis shows the F1 score of each SV genotyping method in different genomic regions. TR and non-TR mean SVs located in and outside of TR regions, respectively. Performance was evaluated on 30× PacBio CLR data and the alignment files were based on minimap2. INS: insertion, DEL: deletion, DUP: duplication, INV: inversion, TRA: translocation