REAGENT or RESOURCE	SOURCE	IDENTIFIER
Bacterial and virus strains
B. mycoides M2E15	This paper	N/A
B. pumilus ECO-B-02	This paper	DSM 32048
Critical commercial assays
Dneasy Powersoil Kit	Qiagen, Hilden (Germany)	#Cat. No. / ID: 47016
Deposited data
Raw reads of DNA-based sequences	Sequence Read Archive of the National Center for Biotechnology Information	PRJNA721368
Original code	This Paper	https://doi.org/10.5281/zenodo.6382466
Software and algorithms
Quantitative Insights Into Microbial Ecology (QIIME 2)	(Bolyen et al., 2019)	https://qiime2.org/
DADA2	(Callahan et al., 2016)	https://doi.org/10.1038/nmeth.3869
MAFFT (ver. 7)	(Katoh and Standley, 2013)	https://doi.org/10.1093/molbev/mst010
FastTree (ver. 2.1)	(Price et al., 2010)	https://doi.org/10.1371/journal.pone.0009490
Ribosomal Database Project classifier	(Wang et al., 2007)	https://doi.org/10.1128/AEM.00062-07
Bacterial Succession Algorithm	(Shade et al., 2013)	https://doi.org/10.1128/mBio.00602-12
Vegan (R package)	(Oksanen et al., 2020)	https://CRAN.R-project.org/package=vegan
Phyloseq (R package)	(McMurdie and Holmes, 2013)	https://joey711.github.io/phyloseq/index.html
pairwise-Adonis (R package)	(Martinez Arbizu, 2020)	https://github.com/pmartinezarbizu/pairwiseAdonis
Phylogenetic Turnover	(Stegen et al., 2013)	https://doi.org/10.1038/ismej.2013.93