Antibodies |
|
Mouse monoclonal anti-MBNL1 |
Wolfson Centre for Inherited Neuromuscular Disease |
MB1a; RRID:AB_2618248
|
Rabbit monoclonal anti-GAPDH |
Abcam |
Cat# ab181602; RRID:AB_2630358
|
Rabbit polyclonal anti-RBFOX2 |
Sigma Aldrich |
Cat# HPA006240; RRID:AB_1079750
|
|
Deposited data |
|
Raw and analyzed data |
This paper |
SRA: PRJNA795461 |
|
Experimental models: Cell lines |
|
Human: Non-disease fibroblasts |
Laboratory of Laura Ranum |
CNTRL-A |
Human: Non-disease fibroblasts |
Laboratory of Laura Ranum |
CNTRL-B |
Human: DM1 fibroblasts |
Laboratory of Laura Ranum |
DM1-A |
Human: DM1 fibroblasts |
Laboratory of Laura Ranum |
DM1-B |
Human: DM2 fibroblasts |
Laboratory of Laura Ranum |
DM2-A |
Human: DM2 fibroblasts |
Laboratory of Laura Ranum |
DM2-B |
Human: DM2 fibroblasts |
Laboratory of Laura Ranum |
DM2-C |
Human: DM2 fibroblasts |
Laboratory of Laura Ranum |
DM2-D |
|
Oligonucleotides |
|
DsiRNA targeting sequence: MBNL1 |
IDT |
hs.Ri.MBNL1.13.1 |
Negative Scramble DsiRNA control |
IDT |
Cat# 51-01-19-09 |
FISH CTG repeat probe: Cy3-CAGCAGCAGCAGCAGCAGCAGCAG |
IDT |
N/A |
FISH CCTG repeat probe: Cy3-CAGGCAGGCAGGCAGGCAGGCAGG |
IDT |
N/A |
All qPCR primer sequences listed in Table 1 in Method details
|
IDT |
N/A |
All splicing primers sequences listed in Table 2 in Method details
|
IDT |
N/A |
|
Software and algorithms |
|
Prism 7 |
GraphPad |
https://www.graphpad.com/scientific-software/prism/ |
STAR |
https://doi.org/10.1093/bioinformatics/bts635 |
version 2.5.1b |
rMATS |
https://doi.org/10.1073/pnas.1419161111 |
version 3.2.5 |
GeneOntology Tools |
https://doi.org/10.1038/75556 and https://doi.org/10.1093/nar/gkaa1113
|
Various |