Table 4.

Location of putative clock-controlled elements at the promoters of goat genes investigated in the present study.

Gene	Accession No.	Elements	Sequence 5′-3′	Chromosomal position (Assembly: ASM170441v1)	Gene position (Transcription start site is +1)
BMAL1	NC_030822.1	RORE	TGACCCAGAA	chr 15 (+) 42932338 to 42932347	−451 to −442
		RORE	AAGTAGGTTA	chr 15 (+) 42932814 to 42932823	+25 to +34
		RORE	AAGTAGGTCA	chr 15 (+) 42932850 to 42932859	+61 to +70
NR1D1	NC_030826.1	E-box	CAAGTG	chr 19 (–) 40046708 to 40046703	−1273 to −1268
		E-box	CAGGTG	chr 19 (–) 40046621 to 40046616	−1186 to −1181
		E-box	CAAGTG	chr 19 (–) 40046286 to 40046281	−851 to −846
		RORE	TGACCTTGGG	chr 19 (–) 40046262 to 40046253	−827 to −818
		RORE	AAAGGGGTCA	chr 19 (–) 40045905 to 40045896	−470 to −461
		RORE	GACAGGGTCA	chr 19 (–) 40045789 to 40045780	−354 to −345
		E-box	CACGTG	chr 19 (–) 40045769 to 40045764	−334 to −329
		E-box	CACATG	chr 19 (–) 40045672 to 40045667	−237 to −232
		E-box	CACATG	chr 19 (–) 40045416 to 40045411	+19 to +24