REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
c-Myc Monoclonal Antibody (9E10) Dilution Factor: 1:100 |
Invitrogen | Cat# MA1-980; RRID: AB_558470 |
Anti-mouse IgG (H+L), F(ab')2 Fragment (Alexa Fluor® 647 Conjugate) Dilution Factor: 1:1000 |
Cell Signaling Technology | Cat# 4410 |
APC anti-human CD3 antibody Dilution Factor: 1:20 |
BioLegend | Cat# 300412; RRID: AB_314066 |
FITC anti-human beta2-microglobulin antibody Dilution Factor: 1:20 |
BioLegend | Cat# 316304; RRID: AB_492837 |
PE anti-human CD279 (PD-1) antibody Dilution Factor: 1:20 |
BioLegend | Cat# 329906; RRID: AB_940483 |
PE/Cyanine7 anti-human CD152 (CTLA-4) antibody Dilution Factor: 1:20 |
BioLegend | Cat# 369613; RRID: AB_2632875 |
Bacterial and virus strains | ||
NEB® 5-alpha Competent E. coli (High Efficiency) | New England Biolabs | Cat# C2987I |
BL21(DE3) Competent E. coli | New England Biolabs | Cat# C2527H |
Biological samples | ||
Human PBMC, Female donor ranging from 25-35 years old | N/A | N/A |
Chemicals, peptides, and recombinant proteins | ||
Isopropyl β-D-1-thiogalactopyranoside | Inalco Pharmaceuticals | Cat# 1758-1400 |
Tryptone | Oxoid | Cat# LP0042B |
Yeast extract | Oxoid | Cat# LP0021B |
Spectinomycin | Inalco Pharmaceuticals | Cat# 1758-9311 |
Ampicillin | Inalco Pharmaceuticals | Cat# 1758-9314 |
NaCl | Biodee | Cat# DE0008 |
Ni-NTA Agarose | QIAGEN | Cat# 30230 |
Tris | Biodee | Cat# DE0006 |
KCl | Sigma-Aldrich | Cat# P5405 |
Imidazole | Sigma-Aldrich | Cat# I5513 |
Phenylmethylsulfonyl fluoride | Sigma-Aldrich | Cat# 78830 |
Electroporation buffer | Celetrix LLC, Manassas VA | Cat# 13-0104 |
0.4% Trypan Blue Solution | Gibco | Cat# 15250061 |
Ficoll-Paque PLUS | Cytiva | Cat# 17-1440-02 |
XYbeads Human CD3/CD28 T Cell Activator | SAILY BIO | Cat# XY-B002-001 |
X-VIVOTM15 | Lonza | Cat# 04-418Q |
Fetal Bovine Serum | Gibco | Cat# 10099 |
Fetal Bovine Serum | PAN-Biotech | Cat# P30-3302 |
Dulbecco’s Modified Eagle’s Medium | MACGENE | Cat# 15019 |
Trypsin-EDTA (0.25%) phenol red | MACGENE | Cat# CC017 |
Penicillin-Streptomycin solution | Hyclone | Cat# SV30010 |
KOD-One PCR Master Mix | TOYOBO | KMM-101 |
PBS | MACGENE | Cat# CC008 |
Opti-MEM™ I Reduced Serum Medium | Thermo Fisher Scientific | Cat# 31985070 |
Benzonase Nuclease | Smart Lifesciences | Cat# SLP00800 |
DNase I, RNase-free | Thermo Fisher Scientific | Cat# EN0521 |
Bestar® Sybr Green qPCR Master Mix | DBI® Bioscience | Cat# DBI-2043 |
RPMI-1640 | MACGENE | Cat# CM10040 |
IL-2 Protein, Human, Recombinant | SinoBiological | Cat# 11848-HNAE |
IL-7 Protein, Human, Recombinant | SinoBiological | Cat# 11821-HNAE |
IL-15 Protein, Human, Recombinant | SinoBiological | Cat# 10360-HNCE |
BSA | YEASEN | Cat# 36103ES25 |
EDTA | Sigma-Aldrich | Cat# E9884 |
PEI MAX® - Transfection Grade Linear Polyethylenimine Hydrochloride (MW 40,000) | Polysciences | Cat# 24765 |
Critical commercial assays | ||
Dynabeads™ Untouched™ Human T Cells Kit | Invitrogen | Cat# 11344D |
Human IFN gamma Uncoated ELISA kit | Invitrogen | Cat# 88-7316-88 |
Human TNF alpha Uncoated ELISA kit | Invitrogen | Cat# 88-7346-88 |
LDH-Glo™ Cytotoxicity Assay | Promega | Cat# J2380 |
DNA Clean & Concentrator-25 (Capped) | Zymo Research | Cat# D4033 |
FastPure Cell/Tissue DNA Isolation Mini Kit | Vazyme | Cat# DC102 |
Experimental models: Cell lines | ||
NALM-6 Passage numbers: 1–20 |
ATCC | CRL-3273™ |
AAV293 cells Passage numbers: 1–20 |
Agilent | Cat# 240073 |
Oligonucleotides | ||
ITR-FW | Genewiz | 5′- GGAACCCCTAGTGATGGAGTT |
ITR-RV | Genewiz | 5′-CGGCCTCAGTGAGCGA |
TRAC-1st-FW | Genewiz | 5′- CCCTTGTCCATCACTGGCAT |
CART-PCR-FW | Genewiz | 5′- GGAGTACGACGTGCTGGATAAG |
TRAC-2st-RV | Genewiz | 5′- GCACACCCCTCATCTGACTT |
DBCO modified crRNA target TRAC | GENERAL BIOL | 5′-AAUAAUUUCUACUCUUGUAGAU GAGUCUCUCAGCUGGUACAC |
Recombinant DNA | ||
pUltra-CNF (Data S1) | Gifted by Prof. Peter G. Schultz | Addgene 48215 |
pET22B-AsCas12a-2C-NLS (Data S1) | This paper | N/A |
pAAV CD19-CAR (Data S1) | This paper | N/A |
pHelper (Data S1) | Agilent | Cat# 240071 |
pAAV-RC6 (Data S1) | Cell Biolabs, Inc. | Cat# VPK-426 |
Software and algorithms | ||
Tanon Gis | Tanon | N/A |
CytExpert 2.3 | Beckman Coulter | https://cytexpert.software.informer.com/2.3/ |
Gen5 | BioTek | https://www.biotek.com/products/software-robotics-software/gen5-microplate-reader-and-imager-software/ |
QuantStudio™ Real-Time PCR Software | Thermo Fisher Scientific | https://www.thermofisher.com/jp/ja/home/global/forms/life-science/quantstudio-6-7-flex-software.html |
ÄKTA pure protein purification system | Cytiva | https://www.cytivalifesciences.com/en/us/shop/chromatography/chromatography-systems/akta-pure-p-05844 |
GraphPad 6.01 | GraphPad | https://www.graphpad.com/dl/96314/10B92408/ |
Deposited data | ||
Plasmid map | This paper | Mendeley Data: https://doi.org/10.17632/x7jmxr2497.1) |
Other | ||
Amicon® Ultra-15 Centrifugal Filter Units 50K | Millipore | Cat# UFC905024 |
AzF (Unnatural amino acid) | Toronto Research Chemicals | A922600 |
NAEK (Unnatural amino acid) | SIRIUS FINE CHEMICALS | SC-8027 |
AeF (Unnatural amino acid) | Chemical synthesized | N/A |
Millipore membrane filter, 0.22 mm pore size | Merck | Cat# SLGVR04NL |
Superdex® 200 increase 10/300 GL | Cytiva | Cat# 28990944 |
Electroporator | Celetrix LLC, Manassas VA | CTX-1500A LE |
Electroporation tube | Celetrix LLC, Manassas VA | Cat# 12-0107 |
DynaMag™-5 Magnet | Invitrogen | Cat# 12303D |
CytoFLEX LX Flow Cytometer | Beckman Coulter | N/A |
Synergy H1 Hybrid Multi-Mode Reader | BioTek | Synergy™ H1 |
NanoDrop One Microvolume UV-Vis Spectrophotometer | Thermo Fisher Scientific | ND-ONE-W |