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. 2022 Apr 14;3(2):101321. doi: 10.1016/j.xpro.2022.101321
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

c-Myc Monoclonal Antibody (9E10)
Dilution Factor: 1:100
Invitrogen Cat# MA1-980;
RRID: AB_558470
Anti-mouse IgG (H+L), F(ab')2 Fragment (Alexa Fluor® 647 Conjugate)
Dilution Factor: 1:1000
Cell Signaling Technology Cat# 4410
APC anti-human CD3 antibody
Dilution Factor: 1:20
BioLegend Cat# 300412;
RRID: AB_314066
FITC anti-human beta2-microglobulin antibody
Dilution Factor: 1:20
BioLegend Cat# 316304;
RRID: AB_492837
PE anti-human CD279 (PD-1) antibody
Dilution Factor: 1:20
BioLegend Cat# 329906;
RRID: AB_940483
PE/Cyanine7 anti-human CD152 (CTLA-4) antibody
Dilution Factor: 1:20
BioLegend Cat# 369613;
RRID: AB_2632875

Bacterial and virus strains

NEB® 5-alpha Competent E. coli (High Efficiency) New England Biolabs Cat# C2987I
BL21(DE3) Competent E. coli New England Biolabs Cat# C2527H

Biological samples

Human PBMC, Female donor ranging from 25-35 years old N/A N/A

Chemicals, peptides, and recombinant proteins

Isopropyl β-D-1-thiogalactopyranoside Inalco Pharmaceuticals Cat# 1758-1400
Tryptone Oxoid Cat# LP0042B
Yeast extract Oxoid Cat# LP0021B
Spectinomycin Inalco Pharmaceuticals Cat# 1758-9311
Ampicillin Inalco Pharmaceuticals Cat# 1758-9314
NaCl Biodee Cat# DE0008
Ni-NTA Agarose QIAGEN Cat# 30230
Tris Biodee Cat# DE0006
KCl Sigma-Aldrich Cat# P5405
Imidazole Sigma-Aldrich Cat# I5513
Phenylmethylsulfonyl fluoride Sigma-Aldrich Cat# 78830
Electroporation buffer Celetrix LLC, Manassas VA Cat# 13-0104
0.4% Trypan Blue Solution Gibco Cat# 15250061
Ficoll-Paque PLUS Cytiva Cat# 17-1440-02
XYbeads Human CD3/CD28 T Cell Activator SAILY BIO Cat# XY-B002-001
X-VIVOTM15 Lonza Cat# 04-418Q
Fetal Bovine Serum Gibco Cat# 10099
Fetal Bovine Serum PAN-Biotech Cat# P30-3302
Dulbecco’s Modified Eagle’s Medium MACGENE Cat# 15019
Trypsin-EDTA (0.25%) phenol red MACGENE Cat# CC017
Penicillin-Streptomycin solution Hyclone Cat# SV30010
KOD-One PCR Master Mix TOYOBO KMM-101
PBS MACGENE Cat# CC008
Opti-MEM™ I Reduced Serum Medium Thermo Fisher Scientific Cat# 31985070
Benzonase Nuclease Smart Lifesciences Cat# SLP00800
DNase I, RNase-free Thermo Fisher Scientific Cat# EN0521
Bestar® Sybr Green qPCR Master Mix DBI® Bioscience Cat# DBI-2043
RPMI-1640 MACGENE Cat# CM10040
IL-2 Protein, Human, Recombinant SinoBiological Cat# 11848-HNAE
IL-7 Protein, Human, Recombinant SinoBiological Cat# 11821-HNAE
IL-15 Protein, Human, Recombinant SinoBiological Cat# 10360-HNCE
BSA YEASEN Cat# 36103ES25
EDTA Sigma-Aldrich Cat# E9884
PEI MAX® - Transfection Grade Linear Polyethylenimine Hydrochloride (MW 40,000) Polysciences Cat# 24765

Critical commercial assays

Dynabeads™ Untouched™ Human T Cells Kit Invitrogen Cat# 11344D
Human IFN gamma Uncoated ELISA kit Invitrogen Cat# 88-7316-88
Human TNF alpha Uncoated ELISA kit Invitrogen Cat# 88-7346-88
LDH-Glo™ Cytotoxicity Assay Promega Cat# J2380
DNA Clean & Concentrator-25 (Capped) Zymo Research Cat# D4033
FastPure Cell/Tissue DNA Isolation Mini Kit Vazyme Cat# DC102

Experimental models: Cell lines

NALM-6
Passage numbers: 1–20
ATCC CRL-3273™
AAV293 cells
Passage numbers: 1–20
Agilent Cat# 240073

Oligonucleotides

ITR-FW Genewiz 5′- GGAACCCCTAGTGATGGAGTT
ITR-RV Genewiz 5′-CGGCCTCAGTGAGCGA
TRAC-1st-FW Genewiz 5′- CCCTTGTCCATCACTGGCAT
CART-PCR-FW Genewiz 5′- GGAGTACGACGTGCTGGATAAG
TRAC-2st-RV Genewiz 5′- GCACACCCCTCATCTGACTT
DBCO modified crRNA target TRAC GENERAL BIOL 5′-AAUAAUUUCUACUCUUGUAGAU
GAGUCUCUCAGCUGGUACAC

Recombinant DNA

pUltra-CNF (Data S1) Gifted by Prof. Peter G. Schultz Addgene 48215
pET22B-AsCas12a-2C-NLS (Data S1) This paper N/A
pAAV CD19-CAR (Data S1) This paper N/A
pHelper (Data S1) Agilent Cat# 240071
pAAV-RC6 (Data S1) Cell Biolabs, Inc. Cat# VPK-426

Software and algorithms

Tanon Gis Tanon N/A
CytExpert 2.3 Beckman Coulter https://cytexpert.software.informer.com/2.3/
Gen5 BioTek https://www.biotek.com/products/software-robotics-software/gen5-microplate-reader-and-imager-software/
QuantStudio™ Real-Time PCR Software Thermo Fisher Scientific https://www.thermofisher.com/jp/ja/home/global/forms/life-science/quantstudio-6-7-flex-software.html
ÄKTA pure protein purification system Cytiva https://www.cytivalifesciences.com/en/us/shop/chromatography/chromatography-systems/akta-pure-p-05844
GraphPad 6.01 GraphPad https://www.graphpad.com/dl/96314/10B92408/

Deposited data

Plasmid map This paper Mendeley Data: https://doi.org/10.17632/x7jmxr2497.1)

Other

Amicon® Ultra-15 Centrifugal Filter Units 50K Millipore Cat# UFC905024
AzF (Unnatural amino acid) Toronto Research Chemicals A922600
NAEK (Unnatural amino acid) SIRIUS FINE CHEMICALS SC-8027
AeF (Unnatural amino acid) Chemical synthesized N/A
Millipore membrane filter, 0.22 mm pore size Merck Cat# SLGVR04NL
Superdex® 200 increase 10/300 GL Cytiva Cat# 28990944
Electroporator Celetrix LLC, Manassas VA CTX-1500A LE
Electroporation tube Celetrix LLC, Manassas VA Cat# 12-0107
DynaMag™-5 Magnet Invitrogen Cat# 12303D
CytoFLEX LX Flow Cytometer Beckman Coulter N/A
Synergy H1 Hybrid Multi-Mode Reader BioTek Synergy™ H1
NanoDrop One Microvolume UV-Vis Spectrophotometer Thermo Fisher Scientific ND-ONE-W