TABLE 2.
ID | Gene | OMIM Condition | CPG category | Genomic Coordinates (GRCh37) | HGSV Nomenclature | Frequency (GnomAD exomes/AbraOM) | Protein Change | Pathogenicity Assessment | Inheritance | Clinical Information | Literature Related to Cancer Predisposition Evidence |
---|---|---|---|---|---|---|---|---|---|---|---|
P03 | TGFBR2 | #614331 COLORECTAL CANCER, HEREDITARY NONPOLYPOSIS, TYPE 6/#610168 LOEYS-DIETZ SYNDROME 2 (AD) | bona fide | 3:30733054 | NM_001024847.2:c.1742A > G | ... | p.Lys581Arg | VUS/likely pathogenic | maternal | ... |
Xu and Pasche, (2007)
Ma et al. (2012) Felicio et al. (2021) |
P04 | DROSHA | ... | candidate | 5:31424577 | NM_013235.5:c.3218A > C | 0.000016/0 | p.Asp1073Ala | VUS/likely pathogenic | N/A | Positive familial cancer history |
Wegert et al. (2015)
Carraro et al. (2016) Felicio et al. (2021) |
P11 | FAH | #276700 TYROSINEMIA, TYPE I (AR) | bona fide | 15:80460444 | NM_000137.2:c.506C > T | ... | p.Ser169Phe | Likely pathogenic | maternal | Positive familial cancer history; syndromic |
Zhang et al. (2015)
Carta et al. (2020) Capellini et al. (2021) |
P13 | MSH2 | #120435 LYNCH SYNDROME I/#158320 MUIR-TORRE SYNDROME (AD); #619096 MISMATCH REPAIR CANCER SYNDROME 2 (AR) | bona fide | 2:47630464 | NM_000251.2:c.134C > A | ... | p.Ala45GLu | VUS/likely pathogenic | maternal | Premature; syndromic | Capasso et al. (2020) |
P16 | VHL | #193300 VON HIPPEL-LINDAU SYNDROME/#171300 PHEOCHROMOCYTOMA (AD) |
bona fide | 3:10183772 | NM_000551.3:c.241C > T | 0.000218/0 | p.Pro81Ser | Likely pathogenic (modifier) | N/A | ... | Schmidt et al. (2016) |
P21 | CHEK2 | #609265 LI-FRAUMENI SYNDROME 2/#14480 BREAST, #114500 COLORECTAL, # 176,807 PROSTATE SUSCEPTIBILITY TO CANCER | bona fide | 22:2,9091741 | NM_007194.4:c.1216C > T | 0.000060/0 | p.Arg406Cys | VUS/likely pathogenic | not maternal | Congenital tumor |
Vahteristo et al. (2002)
Bąk et al. (2014) Southey et al. (2016) |
P22 | VHL | #193300 VON HIPPEL-LINDAU SYNDROME/#171300 PHEOCHROMOCYTOMA (AD) |
bona fide | 3:10183685 | NM_000551.3: c.154G > A | 0.000085/0 | p.Glu52Lys | VUS/likely pathogenic | maternal | Premature | Schmidt et al. (2016) |
P27 | APC | #175100 FAMILIAL ADENOMATOUS POLYPOSIS 1 (AD)/#135290 DESMOID disease, HEREDITARY (AD) | bona fide | 5:112175038 | NM_000038.6:c.3747C > A | ... | p.Cys1249* | Pathogenic | maternal | Positive familial cancer history* |
Baeg et al. (1995)
Schmidt et al. (2016) |
P28 | ERCC5 | # 616,570 CEREBROOCULOFACIOSKELETAL SYNDROME 3 (AR)/# 278,780 XERODERMA PIGMENTOSUM, COMPLEMENTATION GROUP G (AR) | bona fide | 13:103514580 | NM_000123.3:c.1081delC | ... | p.Leu361Trpfs*18 | Likely pathogenic | not paternal | Syndromic | Fassihi et al. (2016) |
MUTYH | #608456 FAMILIAL ADENOMATOUS POLYPOSIS 2 (AR) | bona fide | 1:45798111 | NM_001048174.1:c.656G > A | 0.000008/0 | p.Arg219GLn | VUS/likely pathogenic | paternal | Barreiro et al. (2022) | ||
P30 | RPS19 | # 105,650 DIAMOND-BLACKFAN ANEMIA 1 (AD) | bona fide | 19:42365273 | NM_001022.3:c.164C > T | 0.000248/0 | p.Thr55Met | VUS/likely pathogenic | maternal | Positive familial cancer history; premature; syndromic | Luft, (2010) |