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. 2022 Apr 12;13:858396. doi: 10.3389/fgene.2022.858396

TABLE 2.

Description of 11 potentially pathogenic/likely pathogenic germline heterozygous variants mapped to 10 known/candidate cancer predisposition genes and detected in 10 hepatoblastoma patients.

ID Gene OMIM Condition CPG category Genomic Coordinates (GRCh37) HGSV Nomenclature Frequency (GnomAD exomes/AbraOM) Protein Change Pathogenicity Assessment Inheritance Clinical Information Literature Related to Cancer Predisposition Evidence
P03 TGFBR2 #614331 COLORECTAL CANCER, HEREDITARY NONPOLYPOSIS, TYPE 6/#610168 LOEYS-DIETZ SYNDROME 2 (AD) bona fide 3:30733054 NM_001024847.2:c.1742A > G ... p.Lys581Arg VUS/likely pathogenic maternal ... Xu and Pasche, (2007)
Ma et al. (2012)
Felicio et al. (2021)
P04 DROSHA ... candidate 5:31424577 NM_013235.5:c.3218A > C 0.000016/0 p.Asp1073Ala VUS/likely pathogenic N/A Positive familial cancer history Wegert et al. (2015)
Carraro et al. (2016)
Felicio et al. (2021)
P11 FAH #276700 TYROSINEMIA, TYPE I (AR) bona fide 15:80460444 NM_000137.2:c.506C > T ... p.Ser169Phe Likely pathogenic maternal Positive familial cancer history; syndromic Zhang et al. (2015)
Carta et al. (2020)
Capellini et al. (2021)
P13 MSH2 #120435 LYNCH SYNDROME I/#158320 MUIR-TORRE SYNDROME (AD); #619096 MISMATCH REPAIR CANCER SYNDROME 2 (AR) bona fide 2:47630464 NM_000251.2:c.134C > A ... p.Ala45GLu VUS/likely pathogenic maternal Premature; syndromic Capasso et al. (2020)
P16 VHL #193300 VON HIPPEL-LINDAU SYNDROME/#171300
PHEOCHROMOCYTOMA (AD)
bona fide 3:10183772 NM_000551.3:c.241C > T 0.000218/0 p.Pro81Ser Likely pathogenic (modifier) N/A ... Schmidt et al. (2016)
P21 CHEK2 #609265 LI-FRAUMENI SYNDROME 2/#14480 BREAST, #114500 COLORECTAL, # 176,807 PROSTATE SUSCEPTIBILITY TO CANCER bona fide 22:2,9091741 NM_007194.4:c.1216C > T 0.000060/0 p.Arg406Cys VUS/likely pathogenic not maternal Congenital tumor Vahteristo et al. (2002)
Bąk et al. (2014)
Southey et al. (2016)
P22 VHL #193300 VON HIPPEL-LINDAU SYNDROME/#171300
PHEOCHROMOCYTOMA (AD)
bona fide 3:10183685 NM_000551.3: c.154G > A 0.000085/0 p.Glu52Lys VUS/likely pathogenic maternal Premature Schmidt et al. (2016)
P27 APC #175100 FAMILIAL ADENOMATOUS POLYPOSIS 1 (AD)/#135290 DESMOID disease, HEREDITARY (AD) bona fide 5:112175038 NM_000038.6:c.3747C > A ... p.Cys1249* Pathogenic maternal Positive familial cancer history* Baeg et al. (1995)
Schmidt et al. (2016)
P28 ERCC5 # 616,570 CEREBROOCULOFACIOSKELETAL SYNDROME 3 (AR)/# 278,780 XERODERMA PIGMENTOSUM, COMPLEMENTATION GROUP G (AR) bona fide 13:103514580 NM_000123.3:c.1081delC ... p.Leu361Trpfs*18 Likely pathogenic not paternal Syndromic Fassihi et al. (2016)
MUTYH #608456 FAMILIAL ADENOMATOUS POLYPOSIS 2 (AR) bona fide 1:45798111 NM_001048174.1:c.656G > A 0.000008/0 p.Arg219GLn VUS/likely pathogenic paternal Barreiro et al. (2022)
P30 RPS19 # 105,650 DIAMOND-BLACKFAN ANEMIA 1 (AD) bona fide 19:42365273 NM_001022.3:c.164C > T 0.000248/0 p.Thr55Met VUS/likely pathogenic maternal Positive familial cancer history; premature; syndromic Luft, (2010)