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. 2021 Jul 15;19(4):641–651. doi: 10.1016/j.gpb.2020.06.025

Figure 2.

Figure 2

Key QC metrics of ATAC-seq data A. Forebrain ATAC-seq datasets (sequencing depth normalized to 10 million reads) with distinct RUPr and ProEn (top to bottom: high to low) were visualized on the WashU Epigenome Browser. B. Forebrain ATAC-seq datasets (same as A) with distinct background values (top to bottom: low to high) in the heterochromatin regions highly enriched with repressive H3K9me3 histone modification in the mouse forebrain. C. Relationship between the number of non-redundant uniquely mapped reads and RUPr in ENOCDE mouse ATAC-seq datasets. D. Relationship between ProEn and RUPr in ENOCDE mouse ATAC-seq datasets. E. Relationship between background and RUPr in ENOCDE mouse ATAC-seq datasets. QC, quality control; RUPr, reads under peak ratio; ProEn, promoter enrichment; E12.5, embryonic day 12.5; P0, postnatal day 0.